Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1420 ATGAATAACTTGACTGTTGAAACAGAAGATGCCTTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGCCATCGATGCCTTTAAGAGATCGATTGAGCGTGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGCCGATTGCGAGGTTCGAAGCAGATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAACCGCGCTGTCGGTCTTGACCGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGAAATTGTGAAGCGGCTCTTAGCTGCTGGCGCTGATCCTAATATGGTTGATGGGAATGGACATCGACCCGTCGATGTGATTGTTGCCCCCCTAAGGCATGCTGAGTTTAAATCAATCCTTACGGAACTTCTTAGAACAAATGGTTTGTCTGGTGAAGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCGCATTCTCCTCGCCCTTCGTCTCCTCTGAATGTCCCCTCATCTGCATCGGAGTTAGTTTCTTCTCCAACAAAGTCGAAACTAAATGATTTTCCTATGTATTCTGCATCTGAGAAGAAAGAATATCCTGTTGATCTTTCTCTTCCAGACATCAAGAACAGTATCTACTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCCTGCTCACGGGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCTAGGAGGAGGGATCCAAGAAAGTTTCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGCGCTTGCAGAAGGGGAGATATGTGTGAATATGCTCATGGGGTGTTCGAGTGCTGGCTTCACCCAGCACAATATCGGACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACACATGACTGAGGAACTGCGACCACTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCGCGTTCTTGTGCTTCTGGGGCTTCTGCTATGGATTATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCAGTCCCTGTGATGTCTCCATCACCGTTTACTCCTCCGATGTCTCCCTCTGCCAATGGCATGTCTCACTCGTCCGTGGCTTGGCCTCAACCAAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATTCCAGTAGAGGACTTTGATTATCTGAGCGATTTTGATTTGCAACAACAGCAGCTCCTTAATGACTTGAATTGTCTTTCTCAGCCACCATTAAGTTCAAATTCATTGAGCCGTTCTGGTCGCCTGAAAACTCTGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCGTCTCCCAGATACTCTGATCAAGCTTTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCTGCTGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCAATCTCTCCGATGGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCGCGTGAACTTGGTGCCAATTCTGCTTCTGTTGTCAGTTCCCCTGCAAGTTCTTGGTCTAAATGGGGTCCTTCTAATGGAAGACCTGATTGGGCAGTCAATGCAGATGAAATAGGTAAACTTCGGCGATCATCATCATTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTAAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAACTCGGGAGGGGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATGAACTCCCAAATGGAGTCAGTTGATCATGCTGCATTAGGAGCATGGCTTGAACAAATGCAGCTCGATCATCTTGTCGCTCAACAAAACTGA 2112 45.74 MNNLTVETEDAFSSLLELAANDAIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVEIVKRLLAAGADPNMVDGNGHRPVDVIVAPLRHAEFKSILTELLRTNGLSGEGNLDVLTGARNSHSPRPSSPLNVPSSASELVSSPTKSKLNDFPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHMTEELRPLYVSTGSAVPSPRSCASGASAMDYNTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDIPVEDFDYLSDFDLQQQQLLNDLNCLSQPPLSSNSLSRSGRLKTLTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAQREKQQQFRSLSSRELGANSASVVSSPASSWSKWGPSNGRPDWAVNADEIGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNSGGDSFVSSGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQN 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 58019450 58023961 + Tan0004005.1 Tan08g1420 761312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1420 703 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Tan08g1420 703 MobiDBLite consensus disorder prediction 166 196 - -
Tan08g1420 703 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Tan08g1420 703 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Tan08g1420 703 SUPERFAMILY Ankyrin repeat 6 138 IPR036770 -
Tan08g1420 703 Pfam Ankyrin repeats (3 copies) 54 126 IPR002110 GO:0005515(InterPro)
Tan08g1420 703 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Tan08g1420 703 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Tan08g1420 703 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Tan08g1420 703 PANTHER UNKEMPT FAMILY MEMBER 51 648 IPR045234 -
Tan08g1420 703 Gene3D - 8 157 IPR036770 -
Tan08g1420 703 Gene3D - 274 335 - -
Tan08g1420 703 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Tan08g1420 703 MobiDBLite consensus disorder prediction 164 196 - -
Tan08g1420 703 MobiDBLite consensus disorder prediction 660 679 - -
Tan08g1420 703 MobiDBLite consensus disorder prediction 647 679 - -
Tan08g1420 703 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Tan08g1420 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g2421 Tan-Chr4:83011691 Tan08g1420 Tan-Chr8:58019450 2.30E-250 dispersed
Tan05g0488 Tan-Chr5:3363608 Tan08g1420 Tan-Chr8:58019450 1.30E-133 dispersed
Tan08g0088 Tan-Chr8:805672 Tan08g1420 Tan-Chr8:58019450 1.50E-52 dispersed
Tan08g1420 Tan-Chr8:58019450 Tan09g1181 Tan-Chr9:64142276 1.40E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28161 PF12796 Ank_2 3.10E-09 CL0465 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1420 - - - 0.0