Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1447 ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACTCTTCCACTAATTTCCACCACCACCCTTCTTCTTCTTCTTCTTCTTATTCAAACCCTCTTCCTAATTTCTTCCAGGCGCCGCCGTCATCTCCGCCGCTCCGGCAGGCTCTCCCCCTCCTCCGACTGAGCCCCACCAGATCATCCTCTCAAGATCAGCCTTACTCTTTCTCTTCCTCTGCCGCGATGGAAATTGACAAGAAGAAGAAAAAGAAAAAGAAGAAGGAAGAAAGCGACGACGTTTCAGTGACTGTTGCACTGCACATAGGGCTTCCAAGCCCTAGTGCTTCAGAAATGGCAAGGCTTTTGGTGTCTAATAATAATAATGAAAATGAAAATGAAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCAACAAGCAGTTGCAATATCTGGATTCTGTTTGAGTAGTGGCAGACTCAACAAAGGACAGTATTGGATCCCAACTCCTTCACAAATCCTCATTGGTCCTACTCAGTTTTCTTGTCCTGTTTGTTTCAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGTCATGGCTCTCAATACAGGCGAGGACCAGAGTCCCTAAGAGGAACACAGCCAACTGGCATGCTGAGACTGCCATGCTACTGCTGCTCGCCGGGTTGTCGCAACAACATCGACCATCCGAGAGCGAAGCCATTGAAGGACTTCAGAACTCTTCAAACTCACTACAAACGCAAGCATGGAATCAAGCCATTCATGTGTAGAAAATGTGGCAAAGCCTTTGCTGTGAGAGGAGACTGGAGAACTCATGAGAAGAATTGTGGGAAACTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAAGCCTTTGGGAATGGCCATGCTGCTTATAATAGTAATGCTAACAATAATAGTGATCATCATCATCATCATCAACAACATCTTCATCATCATCTTCATGGGTTTGATGAGGAGGATGAGCCTGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1116 43.64 MDDPSTNFFTNLFKFNSSTNFHHHPSSSSSSYSNPLPNFFQAPPSSPPLRQALPLLRLSPTRSSSQDQPYSFSSSAAMEIDKKKKKKKKKEESDDVSVTVALHIGLPSPSASEMARLLVSNNNNENENEEEKEEEEEEEEEELEEEEEEEEEEEEEQQAVAISGFCLSSGRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNSNANNNSDHHHHHQQHLHHHLHGFDEEDEPAYSEVEQDHD 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 59219365 59221924 - Tan0014322.1 Tan08g1447 761339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1447 371 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Tan08g1447 371 MobiDBLite consensus disorder prediction 78 96 - -
Tan08g1447 371 SMART c2h2final6 192 214 IPR013087 -
Tan08g1447 371 SMART c2h2final6 276 296 IPR013087 -
Tan08g1447 371 Coils Coil 114 163 - -
Tan08g1447 371 PANTHER ZINC FINGER PROTEIN WIP2 21 346 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Tan08g1447 371 Gene3D Classic Zinc Finger 191 214 - -
Tan08g1447 371 FunFam zinc finger protein WIP2-like 191 214 - -
Tan08g1447 371 MobiDBLite consensus disorder prediction 57 75 - -
Tan08g1447 371 SUPERFAMILY beta-beta-alpha zinc fingers 258 296 IPR036236 -
Tan08g1447 371 MobiDBLite consensus disorder prediction 121 159 - -
Tan08g1447 371 MobiDBLite consensus disorder prediction 329 371 - -
Tan08g1447 371 MobiDBLite consensus disorder prediction 22 39 - -
Tan08g1447 371 Gene3D Classic Zinc Finger 235 324 - -
Tan08g1447 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 219 IPR013087 -
Tan08g1447 371 MobiDBLite consensus disorder prediction 22 96 - -
Tan08g1447 371 FunFam Zinc finger protein WIP2 245 327 - -
Tan08g1447 371 MobiDBLite consensus disorder prediction 350 371 - -
Tan08g1447 371 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 275 299 - -
Tan08g1447 371 MobiDBLite consensus disorder prediction 127 158 - -
Tan08g1447 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 276 296 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0269 Tan-Chr3:41076511 Tan08g1447 Tan-Chr8:59219365 1.60E-100 dispersed
Tan07g0737 Tan-Chr7:11750849 Tan08g1447 Tan-Chr8:59219365 5.60E-97 dispersed
Tan08g1447 Tan-Chr8:59219365 Tan11g1929 Tan-Chr11:29393639 2.70E-85 dispersed
Tan06g0567 Tan-Chr6:4335233 Tan08g1447 Tan-Chr8:59219365 1.40E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28169 None None None None Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1447 - - - 0.0