Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1454 ATGGAGATTAAAGTGGGGACTGTACGTGGATCCAGTCCCATCGGGCGTCAATCGGATGATACTGGACTTGAATCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTCCTCCACTCGCCGGATTCCGACGGAGGCGCGACTGCGGTGGCTGTGACCGATGATTCCGTTCACCACCGCATCAAAGACGTTCCCCAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATCGAACGCGCCGCCAAGTTCTCGGTCTTGGCTGAAGAGCACTCGCCGGAGATGACAAGTTCCGTGCCGTTGAATTCGAGCGTCAATTTGGAGAAAGTAAAGAACGAACCCACCACCGAAACCGATTCGAACCCTAATCACTTGCAGACTTTAATATCCGATCCGACGGTGGAGAACAACACGAACCAGAAATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAGAGCAACGAAGATGCTGAAAAGCTTCCCTACGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGTCTAGCAGAGCGAGCAAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAACGTCAAGTGGAGTTCTTGTCAATGAGGCTAGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCTGTACTTGAAAGCAACTTTCCGACCATGGTTACGCCATTGATGTGGCCCGAAATCCCAATTAGTGGAAACAGACAACAATATCAACCGCAATGGCATTTTGATGCAGCAGTTAACCAGCAAGCCTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTACGACTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA 1122 48.93 MEIKVGTVRGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSDGGATAVAVTDDSVHHRIKDVPQPYFSAFNCNLTFPTNSALIERAAKFSVLAEEHSPEMTSSVPLNSSVNLEKVKNEPTTETDSNPNHLQTLISDPTVENNTNQKSAKRKEREKKGKGSSKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESNFPTMVTPLMWPEIPISGNRQQYQPQWHFDAAVNQQAWARDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 59458293 59464518 - Tan0015220.1 Tan08g1454 761346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1454 373 Coils Coil 251 271 - -
Tan08g1454 373 Pfam Helix-loop-helix DNA-binding domain 215 262 IPR011598 GO:0046983(InterPro)
Tan08g1454 373 MobiDBLite consensus disorder prediction 184 203 - -
Tan08g1454 373 CDD bHLH_AtBPE_like 201 286 - -
Tan08g1454 373 MobiDBLite consensus disorder prediction 121 203 - -
Tan08g1454 373 Gene3D - 208 281 IPR036638 GO:0046983(InterPro)
Tan08g1454 373 FunFam transcription factor bHLH48-like isoform X1 208 280 - -
Tan08g1454 373 SMART finulus 217 267 IPR011598 GO:0046983(InterPro)
Tan08g1454 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 280 IPR036638 GO:0046983(InterPro)
Tan08g1454 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983(InterPro)
Tan08g1454 373 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 108 333 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Tan08g1454 373 MobiDBLite consensus disorder prediction 121 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1454 Tan-Chr8:59458293 Tan11g1640 Tan-Chr11:15877923 3.80E-34 dispersed
Tan08g1454 Tan-Chr8:59458293 Tan02g0786 Tan-Chr2:7608675 7.60E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28170 PF00010 HLH 1.40E-05 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1454 - - - 0.0