Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1454 | ATGGAGATTAAAGTGGGGACTGTACGTGGATCCAGTCCCATCGGGCGTCAATCGGATGATACTGGACTTGAATCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTCCTCCACTCGCCGGATTCCGACGGAGGCGCGACTGCGGTGGCTGTGACCGATGATTCCGTTCACCACCGCATCAAAGACGTTCCCCAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATCGAACGCGCCGCCAAGTTCTCGGTCTTGGCTGAAGAGCACTCGCCGGAGATGACAAGTTCCGTGCCGTTGAATTCGAGCGTCAATTTGGAGAAAGTAAAGAACGAACCCACCACCGAAACCGATTCGAACCCTAATCACTTGCAGACTTTAATATCCGATCCGACGGTGGAGAACAACACGAACCAGAAATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAGAGCAACGAAGATGCTGAAAAGCTTCCCTACGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGTCTAGCAGAGCGAGCAAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAACGTCAAGTGGAGTTCTTGTCAATGAGGCTAGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCTGTACTTGAAAGCAACTTTCCGACCATGGTTACGCCATTGATGTGGCCCGAAATCCCAATTAGTGGAAACAGACAACAATATCAACCGCAATGGCATTTTGATGCAGCAGTTAACCAGCAAGCCTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTACGACTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA | 1122 | 48.93 | MEIKVGTVRGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSDGGATAVAVTDDSVHHRIKDVPQPYFSAFNCNLTFPTNSALIERAAKFSVLAEEHSPEMTSSVPLNSSVNLEKVKNEPTTETDSNPNHLQTLISDPTVENNTNQKSAKRKEREKKGKGSSKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESNFPTMVTPLMWPEIPISGNRQQYQPQWHFDAAVNQQAWARDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 59458293 | 59464518 | - | Tan0015220.1 | Tan08g1454 | 761346 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1454 | 373 | Coils | Coil | 251 | 271 | - | - | |
Tan08g1454 | 373 | Pfam | Helix-loop-helix DNA-binding domain | 215 | 262 | IPR011598 | GO:0046983(InterPro) | |
Tan08g1454 | 373 | MobiDBLite | consensus disorder prediction | 184 | 203 | - | - | |
Tan08g1454 | 373 | CDD | bHLH_AtBPE_like | 201 | 286 | - | - | |
Tan08g1454 | 373 | MobiDBLite | consensus disorder prediction | 121 | 203 | - | - | |
Tan08g1454 | 373 | Gene3D | - | 208 | 281 | IPR036638 | GO:0046983(InterPro) | |
Tan08g1454 | 373 | FunFam | transcription factor bHLH48-like isoform X1 | 208 | 280 | - | - | |
Tan08g1454 | 373 | SMART | finulus | 217 | 267 | IPR011598 | GO:0046983(InterPro) | |
Tan08g1454 | 373 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 209 | 280 | IPR036638 | GO:0046983(InterPro) | |
Tan08g1454 | 373 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 211 | 261 | IPR011598 | GO:0046983(InterPro) | |
Tan08g1454 | 373 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 108 | 333 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Tan08g1454 | 373 | MobiDBLite | consensus disorder prediction | 121 | 169 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g1454 | Tan-Chr8:59458293 | Tan11g1640 | Tan-Chr11:15877923 | 3.80E-34 | dispersed | |
Tan08g1454 | Tan-Chr8:59458293 | Tan02g0786 | Tan-Chr2:7608675 | 7.60E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28170 | PF00010 | HLH | 1.40E-05 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1454 | - | - | - | 0.0 |