Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1467 ATGGCTTCTTCCAATATTAAAACCAGCTCCATCAGCCAACAAGCAAACGAGCAAGAACAAAAACAACAACAACAACTCCATCATCATCAACAACAACAACATCAGCTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATTCCTCATTGTTCAACTTCCAAACCCAAAACTTTCATGATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCTTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGAGAATTGGATCAAGCCCTTTTTCTGTATCTTGATGGACAAGAACCTTCTACAACTATTACTCAAGATCAAAGACAGAGCTCAGGGATGAGGCCGCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCACGTCGACCCGTCACCAACAAAAGCAAACACAGCATTGATTAACCATGGTGATTCAAAGATCAAAGCATCAGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGCAGTGGAGCCACTCCATCTGGACCAGCCCCAACCCCAACCGAACCTCATGCCAAACCTCCAAAACGTGAGGCTAACAAGAAAGGGCTGACCTCAAGTTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGACTCTTAGAAGGCTGGCTCAGAATCGAGAGGCTGCGAGAAAAAGCAGGCTCAGAAAAAAGGCTTATGTTCAGCAATTGGAAATGAGTAGGATTAAGCTCACGCAGCTAGAGCAAGAGCTTCAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGTGGAGCAGCCATTTTAGGAGCTGACCAAGGACTTCCACCTGGCCTCCATAACCTCAGCTCTGATGTTGCAGTGTTTGACATCGAGTATGGCCGGTGGCAGGAGGAGCACCACCGGCTGATGTGCGAGCTCCGAGCGGCCGTGCAGGAGCACTTACCGGAGAACGAGCTCCGGCTGTTCGTCGACAACTGCCTCGCCCATTACGACGAGGTTATGAACTTGAAGATGATGGTGGCTAAGTCCGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGGTGCTTCATGTGGATGGGCGATTTTAGGCCCTCTGAGCTCATCAAGATAGTAATGGGTCAAATAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCCACACAAGAGAGTGAAGAGGCATTGTCTCAAGGACTTGAAGCCCTAAACCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTACATGGGGCAGATGACCTTAGCCATCAACAAACTCTCTACCCTCGAAGGCTTTGTAAGACAGGCAGACAATTTGAGACATCAAACGCTACATCGATTGCACCAAATGTTAACAACCCGTCAAGCTGCAAGGTGTTTGCTAGCCATTGCAGAGTATTTTCATCGACTTCGGGCTCTCAGCTCTTTGTGGTTGGCTCGACCCAGGCAGGATTGA 1518 48.16 MASSNIKTSSISQQANEQEQKQQQQLHHHQQQQHQLLQTPNFVIPKNSSLFNFQTQNFHDHHHHHHQLPFSMNLPSISPNFISKDGGGDDLGELDQALFLYLDGQEPSTTITQDQRQSSGMRPPTLNIFPSQPMHVDPSPTKANTALINHGDSKIKASEPSKELANQRSSGATPSGPAPTPTEPHAKPPKREANKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGADQGLPPGLHNLSSDVAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLAHYDEVMNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIVMGQIEPLTEHQILNICGLQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTLHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 60396535 60406999 - Tan0009140.1 Tan08g1467 761359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1467 505 Pfam Seed dormancy control 305 379 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan08g1467 505 SUPERFAMILY Leucine zipper domain 213 255 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1467 505 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 211 255 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1467 505 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 216 231 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1467 505 PANTHER TRANSCRIPTION FACTOR TGA9 125 504 - -
Tan08g1467 505 Gene3D - 212 262 - -
Tan08g1467 505 MobiDBLite consensus disorder prediction 105 148 - -
Tan08g1467 505 FunFam BZIP family transcription factor 212 261 - -
Tan08g1467 505 ProSiteProfiles DOG1 domain profile. 287 501 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Tan08g1467 505 MobiDBLite consensus disorder prediction 162 176 - -
Tan08g1467 505 SMART brlzneu 209 272 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1467 505 Coils Coil 12 32 - -
Tan08g1467 505 Coils Coil 232 259 - -
Tan08g1467 505 MobiDBLite consensus disorder prediction 105 216 - -
Tan08g1467 505 Pfam Basic region leucine zipper 210 254 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1467 505 CDD bZIP_HBP1b-like 213 265 - -
Tan08g1467 505 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1750 Tan-Chr5:54624792 Tan08g1467 Tan-Chr8:60396535 4.10E-96 dispersed
Tan05g1751 Tan-Chr5:54624792 Tan08g1467 Tan-Chr8:60396535 3.90E-97 dispersed
Tan08g1467 Tan-Chr8:60396535 Tan11g1872 Tan-Chr11:24285573 3.30E-94 dispersed
Tan08g1467 Tan-Chr8:60396535 Tan11g1871 Tan-Chr11:24285573 3.30E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28172 PF14144 DOG1 8.00E-32 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1467 K14431 - csv:101204923 814.683