Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1474 ATGCTCCAAAAGCGTCTGTTTACGTATCTTAGTGTCGTTTTCTATTCGACGATTCTCACTTCGCTTGCTCGGGCGTTCACTGACCCTGCGGATGTTGCAGCTCTTCTGGATCTGTACAGTGCTTTGAACTACCCACCAGAGCTTATAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGTGGAATCATGGACTGGAGTATCTTGCTCCGGATCATCTGTAATATACCTTAAAATCCGCGGACTAAACCTCACTGGGAATCTTGGAGGGCAGCTCAACAACCTCAACAATTTGAAACAACTGGATGTTAGCTCTAATAGACTTACGGGTGAGATTCCCAATAACTTGCCTCCTAATGCTACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCACATACTTTACCTTACATGGGAAATCTCCGACATTTAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTGTCATATAATGACTTCACTGGAGATTTGCCAAGTTCATTCGGTTCCCTGACAAACATCACTAGGCTGTTCTTGCAGAACAACAAATTTACTGGATCAGTTGCCTACTTGTCTCACCTTCCATTAATTGACTTGAACATCCAAGACAATTCTTTTAGTGGCATTATTCCAGACAATTTTAGAACTATTCCAAATTTGTGGATTGGGGGAAATAGGTTTCGTGCAGAAGTCAATTCTCCACCCTGGGACTTCCCCCTGGAAAAAGCACCTGTGGTGCAAAACATCAGTGGTCCCCCAACAACCCAGTCAAATGCTATCCAGAATTATCCCTCTCGTGGTGTAGTCAGGCATCAGAAGAAAAGGCTTGGTCCTGGTGGAATAGTTCTCCTGGTTGGCGGGTTAACGCTAGTTGTAACCTTTGCAACTTTCTTTGTCGTATTCGCCATGAAGAAAGTGCATGAAAAGAAAATAAATTTGAAGATTAGCCATATGTTACCCCATTTTCTTCCTCTGGATGGAGCTGAAGCTGGTTCGTCTATTGCACCAGAAGCAAGCACACGGAGCTTGCCCCTGAGTTCTCTACTCATGGGTGGTCCAAGGCCTATACCTCTATTAAATCACACAAGAACCGAGAAAGCTTCTGGAAGACAAGGTTTCTCAAAGAGATGCAAGCTTCCAGTGAGAACAAAAATATACACTCTGGCAGAGCTTCAATCCACCACAAACAACTTTAGTCAAGAGAATCTTCTTGGAGAGGGATCTCTCGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCTGTGAAAAACATCAATATGGGAGCGCTCTCTTTCACAGAAGAACAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCGAACATTGTTACGCTTCTTGGGTATTGTGTAGAGCATGGACAACATTTACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGACGCTTTACACTGTGAAGCTTTCAGGCCTCTGTCATGGACTGTCCGTCTCCAGATTTCTCTTGGAGTTGCTAGGGCTTTAGATTATTTGCATTCAAGTTTTTTCCCGCCATTTGCTCACTGCAATGTGAAGGCTGCCAACATCTTACTTGATGAAGAACTAATGCCTCATATTTGTGATTGTGGGATGTCTGTTTTGAGACCACTTGTGACCAATAGAGTTAAAACGAAGGCTTCTGAGATTGCCAGTGGTGACAGAGGCTATCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGAAGAAAACCATTTGACAGTTCGAAACCGAGGAAAGAGCAATGGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAACGAGAGTTTAGAACAGATGGTTGATCCAGGCATTAAAGGAACATTTTCCTCTAAGGTCCTCTCTCGCTTTGTCGATATTATCTCCCTTTGTATACAGCCTGTTAGGGAATTCCGACCACCAATGTCTGAAATAGTGGAACAACTAAGAAATCTTGAGAGGAAGATGGAGATTATGGCAAAACGTAGTGCAGCAGATGGAGTAACTGAAATGGATCCTTTTGAGAAATCTTTTCGTTCAACCAACACTGGTTTCGTATGTTCACCAGCATACAGCTATTCTTCCACCCCAGCTTAA 2223 43.09 MLQKRLFTYLSVVFYSTILTSLARAFTDPADVAALLDLYSALNYPPELIGWRKEGGDPCVESWTGVSCSGSSVIYLKIRGLNLTGNLGGQLNNLNNLKQLDVSSNRLTGEIPNNLPPNATHINMAFNHLSQNIPHTLPYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFTGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSHLPLIDLNIQDNSFSGIIPDNFRTIPNLWIGGNRFRAEVNSPPWDFPLEKAPVVQNISGPPTTQSNAIQNYPSRGVVRHQKKRLGPGGIVLLVGGLTLVVTFATFFVVFAMKKVHEKKINLKISHMLPHFLPLDGAEAGSSIAPEASTRSLPLSSLLMGGPRPIPLLNHTRTEKASGRQGFSKRCKLPVRTKIYTLAELQSTTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINMGALSFTEEQQFLDVVWTASRLRHPNIVTLLGYCVEHGQHLLGYEYVRNLSLDDALHCEAFRPLSWTVRLQISLGVARALDYLHSSFFPPFAHCNVKAANILLDEELMPHICDCGMSVLRPLVTNRVKTKASEIASGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDSSKPRKEQWLVKWASSRLHDNESLEQMVDPGIKGTFSSKVLSRFVDIISLCIQPVREFRPPMSEIVEQLRNLERKMEIMAKRSAADGVTEMDPFEKSFRSTNTGFVCSPAYSYSSTPA 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 61025765 61031318 - Tan0015150.1 Tan08g1474 761366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1474 740 Gene3D Ribonuclease Inhibitor 28 260 IPR032675 -
Tan08g1474 740 FunFam Leucine-rich repeat receptor-like protein kinase 493 702 - -
Tan08g1474 740 Pfam Leucine Rich Repeat 96 115 IPR001611 GO:0005515(InterPro)
Tan08g1474 740 Pfam Leucine Rich Repeat 213 232 IPR001611 GO:0005515(InterPro)
Tan08g1474 740 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Tan08g1474 740 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 255 - -
Tan08g1474 740 SUPERFAMILY L domain-like 27 238 - -
Tan08g1474 740 Gene3D Transferase(Phosphotransferase) domain 1 493 715 - -
Tan08g1474 740 SMART LRR_typ_2 94 118 IPR003591 -
Tan08g1474 740 SMART LRR_typ_2 164 187 IPR003591 -
Tan08g1474 740 SMART LRR_typ_2 188 211 IPR003591 -
Tan08g1474 740 SMART LRR_typ_2 140 163 IPR003591 -
Tan08g1474 740 Gene3D Phosphorylase Kinase; domain 1 377 492 - -
Tan08g1474 740 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 380 492 - -
Tan08g1474 740 Coils Coil 684 704 - -
Tan08g1474 740 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515(InterPro)
Tan08g1474 740 ProSiteProfiles Protein kinase domain profile. 415 701 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g1474 740 Pfam Protein tyrosine and serine/threonine kinase 417 691 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g1474 740 SUPERFAMILY Protein kinase-like (PK-like) 399 694 IPR011009 -
Tan08g1474 740 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 695 IPR046959 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1474 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1474 Tan-Chr8:61025765 Tan11g2046 Tan-Chr11:43040410 1.20E-97 dispersed
Tan08g1473 Tan-Chr8:61000791 Tan08g1474 Tan-Chr8:61025765 1.90E-201 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan05g2855 . 388 680 Strubbelig Receptor Gene Family AT1G11130 53.7 2.5e-84 310.8
Tan08g1474 . 1 737 Strubbelig Receptor Gene Family AT5G06820 53.7 1.0e-192 671.0
Tan02g0246 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0247 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0248 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan02g0249 . 34 787 Strubbelig Receptor Gene Family AT4G03390 61.9 1.1e-202 704.1
Tan03g2439 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2440 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan03g2441 . 31 754 Strubbelig Receptor Gene Family AT4G03390 52.7 4.9e-161 565.8
Tan11g2046 . 20 663 Strubbelig Receptor Gene Family AT3G13065 53.5 3.8e-141 499.6
Tan11g2046 . 10 685 Strubbelig Receptor Gene Family AT1G78980 61.3 2.8e-192 669.5
Tan04g2828 . 30 717 Strubbelig Receptor Gene Family AT1G78980 52.5 7.0e-151 531.9
Tan06g0048 . 24 690 Strubbelig Receptor Gene Family AT1G78980 53.1 3.2e-135 479.9
Tan04g2828 . 4 710 Strubbelig Receptor Gene Family AT1G53730 61.7 1.8e-213 740.0
Tan06g0048 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.3 4.8e-195 678.7
Tan11g2046 . 24 671 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-145 512.7
Tan04g2828 . 11 714 Strubbelig Receptor Gene Family AT3G14350 51.9 2.4e-183 639.8
Tan06g0048 . 10 702 Strubbelig Receptor Gene Family AT3G14350 57.4 3.3e-177 619.4
Tan05g2855 . 336 710 Strubbelig Receptor Gene Family AT4G22130 82.2 4.8e-174 608.6
Tan04g2828 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.6 2.6e-119 426.8
Tan06g0048 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.5 4.5e-116 416.0
Tan02g0246 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0247 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0248 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan02g0249 . 484 779 Strubbelig Receptor Gene Family AT4G22130 61.3 2.5e-106 383.6
Tan11g2046 . 368 685 Strubbelig Receptor Gene Family AT4G22130 56.3 1.2e-100 364.8
Tan03g2439 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2440 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
Tan03g2441 . 466 754 Strubbelig Receptor Gene Family AT4G22130 58.1 8.9e-96 348.6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67950 PF07714 PK_Tyr_Ser-Thr 8.20E-34 CL0016 Tan PK