Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1501 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGACGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCGTTAGAGGACACTTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTTATGGGGAATTTTCTTTCGCTGTGGTTCAAGCGAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCGTGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAAGAATCTAATGAGGCTTGCTCAAGAAAATGGAACCATAACCGAAGATATTGTCCGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAACCGACAATTGCAGCAATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGGGAGGTACATTGTACATCGGTAACGTCGGTGACTCCCGGGCAATTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCACAATGCCAGTATTGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACATATCGTTGTTATGAAGCACGGAGTGTGGCGTATAAAAGGCATAATTCAGGTTTCCAGATCGATAGGCGATGCATATTTGAAAAGGCCAGAGTTCTCTCTCGATCCATCATTTCCACGATTCCATCTTGCAGAGCCTCTTCGACGGCCTGTTCTTACCGCTGAACCATCGTTAAGTACAAGAGTTCTACAACCCAATGACAAATTTCTCATATTTGCATCTGATGGCCTTTGGGAGCATCTATCAAATCAACAAGCTGTCGAGATTGTGTATAATAACCCACGAGCGGGAATCGCCAAAAAACTTGTCAAAACAGCACTAACCGAGGCTGCAAGGAAGAGGGAGATGAGATATGATGATCTCAAGAAGCTCGAAAAAGGCATACGACGGTTCTTTCACGACGATATCACAGTTGTTGTCATCTTTCTAGACCATGAGTTGCAAGGGAAGAAGGCACATGTACCAGAATTATCTGTTCGTGGGTTCACCGACACCGTTGGACCATCGAATTTCAACGTTTTTCGAGGCATTGATGAAAATGGAAGGTCTGTTGGCTGA 1173 44.93 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDTLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGRDATFVGVYDGHGGPDASRFICDHLFKNLMRLAQENGTITEDIVRSAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWGGTLYIGNVGDSRAIIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLSNQQAVEIVYNNPRAGIAKKLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDHELQGKKAHVPELSVRGFTDTVGPSNFNVFRGIDENGRSVG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 62350594 62354451 + Tan0011812.1 Tan08g1501 761393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1501 390 PANTHER PROTEIN PHOSPHATASE 40 347 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan08g1501 390 Gene3D - 27 358 IPR036457 -
Tan08g1501 390 Pfam Protein phosphatase 2C 70 317 IPR001932 -
Tan08g1501 390 FunFam Probable protein phosphatase 2C 42 40 356 - -
Tan08g1501 390 SUPERFAMILY PP2C-like 51 349 IPR036457 -
Tan08g1501 390 SMART PP2C_4 43 346 IPR001932 -
Tan08g1501 390 CDD PP2Cc 47 348 IPR001932 -
Tan08g1501 390 ProSiteProfiles PPM-type phosphatase domain profile. 49 348 IPR001932 -
Tan08g1501 390 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g1010 Tan-Chr2:14277094 Tan08g1501 Tan-Chr8:62350594 1.20E-115 dispersed
Tan06g2774 Tan-Chr6:79920422 Tan08g1501 Tan-Chr8:62350594 1.00E-85 dispersed
Tan08g1501 Tan-Chr8:62350594 Tan08g1951 Tan-Chr8:71647066 3.50E-115 dispersed
Tan08g1501 Tan-Chr8:62350594 Tan08g1502 Tan-Chr8:62350594 1.30E-226 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1501 K01102 - csv:101222146 755.362