Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1518 ATGGGTGACGAAATCTTTGATGCCATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCAAACTCGGTTCCAAATGAAGATGTGAATTTAGCTGATTTGACAGAGGATCCTGTTCATAGATTTGGAGAAGCTATCAGGTTGAGGACGAGACATCGGTGGAGAAGGCGTCAAGTCCAAATTCCTTCCGAGACTCAGAACATTTCATTGGAACTGAGTGAAATTATGGTCAATTCAGGCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGGCAGGGAAAACATGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGGCAGAGAATAAGAGTGATGTTGAAAAGGGAAGTGACTCTGATGGGAGTTTCTTTGATTGTAATATCTGTCTGGACTTGGCTAGGGACCCTGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCGTGCCTTTATCGATGGCTACATCTACATTCAGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAATGTGACTCCAATTTATGGGCGTGGCAGCAACAACCCTGTGACAGAGGAGGATGCTGCACTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATCCAGAGAACTGCATTTACTTTCCCAGTGGAGGAGATGATTCGACGATTAGGAAACAGATTTGATTTCAATCGTGATCTAGACCAACTGCCTGAGCCAGACAGTTCACATGAAACATATGGTAGATCTCCAACCTTGTTAAATAGGATTTTAACATCCCGGGGAATTCGTAGAGAACAAATTTCATTGCCCCCCCAGGATGATGTAGGAGTTTTAGAACTCCCTGATGTGTCTGGCACTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACAGCGGACAAGAGTTTCTTCTCTTACCTCTGCATTTAATTCTGCTGATAGGCTTCCAGAGGGCTTTTTATATACCGATCCGCTCATTCCTAGACATCAAGAGCAGCCTCCTCCACCTGTAGAGGATAGAGATTCTTTCTCCAGCATCGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCCTTTCAACATCATCATCCAGAAGAAGAAACGATCCTTTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTGA 1278 44.44 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEDPVHRFGEAIRLRTRHRWRRRQVQIPSETQNISLELSEIMVNSGNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKAENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKNVTPIYGRGSNNPVTEEDAALKIPLRPHARKVESLRQTIQRTAFTFPVEEMIRRLGNRFDFNRDLDQLPEPDSSHETYGRSPTLLNRILTSRGIRREQISLPPQDDVGVLELPDVSGTEAGETRLQSLPVLRSLLQRTRVSSLTSAFNSADRLPEGFLYTDPLIPRHQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDPLQVSDVDSGNSRAPRRRRLA 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 62883541 62886425 + Tan0003706.1 Tan08g1518 761410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1518 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 256 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Tan08g1518 425 SMART ring_2 141 181 IPR001841 -
Tan08g1518 425 FunFam Zinc finger family protein 122 195 - -
Tan08g1518 425 SUPERFAMILY RING/U-box 137 194 - -
Tan08g1518 425 CDD RING-HC_AtRMA-like 139 182 - -
Tan08g1518 425 Pfam RING-type zinc-finger 141 179 IPR027370 -
Tan08g1518 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 202 IPR013083 -
Tan08g1518 425 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Tan08g1518 425 MobiDBLite consensus disorder prediction 387 414 - -
Tan08g1518 425 MobiDBLite consensus disorder prediction 387 425 - -
Tan08g1518 425 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1430 Tan-Chr3:70712022 Tan08g1518 Tan-Chr8:62883541 6.30E-24 dispersed
Tan04g2472 Tan-Chr4:83504578 Tan08g1518 Tan-Chr8:62883541 9.10E-35 dispersed
Tan05g3289 Tan-Chr5:84814470 Tan08g1518 Tan-Chr8:62883541 6.50E-24 dispersed
Tan07g0041 Tan-Chr7:2531692 Tan08g1518 Tan-Chr8:62883541 1.00E-06 dispersed
Tan08g1518 Tan-Chr8:62883541 Tan02g1923 Tan-Chr2:87800081 1.10E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1518 K10666 - csv:101220497 760.755