Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1608 | ATGAACACCACCACAGACTCCGGCGGACCAACTTCCTCCGGCGACGTCGGCAGTTTCCCCTACATCGTCGGAATTTCAGTCGGAATCCTCTTCCTTCTCACAACCGTAACAATCGCCACTTATTTTTGCACCAGAACCACCGTTCCGCTGCCGAATCGCCGCCGCCGACCGGAGGAACGGCAGGATTTCGTCGTCGATATCGGACCGGGGCTGGAAGATGAGGCCATTGATGGATATCCGAAGATTCTGTATTCGGAGGCGAAATTGGACGGGAAATTGGAATCCGCCGCCGGTAGCGGCTGCTCGATTTGTTTGGGGGATTATAAGAACGGCGACGTTTTGAGATTGTTGCCGGATTGTAGCCATTTGTTTCATATCGGTTGTATTGATCCGTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGCAGAACGTCGCCGGTGCCGACGCCGATTCCGACCCCCTTGGCGGAGGTGGTTCCGTTTGCCATCGGAAGGAGTTGA | 501 | 55.49 | MNTTTDSGGPTSSGDVGSFPYIVGISVGILFLLTTVTIATYFCTRTTVPLPNRRRRPEERQDFVVDIGPGLEDEAIDGYPKILYSEAKLDGKLESAAGSGCSICLGDYKNGDVLRLLPDCSHLFHIGCIDPWLRLNPSCPVCRTSPVPTPIPTPLAEVVPFAIGRS | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 65449384 | 65450001 | - | Tan0017689.1 | Tan08g1608 | 761500 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1608 | 166 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 148 | IPR013083 | - | |
Tan08g1608 | 166 | SMART | ring_2 | 101 | 142 | IPR001841 | - | |
Tan08g1608 | 166 | CDD | RING-H2_EL5-like | 101 | 143 | - | - | |
Tan08g1608 | 166 | Pfam | Ring finger domain | 101 | 143 | IPR001841 | - | |
Tan08g1608 | 166 | SUPERFAMILY | RING/U-box | 76 | 149 | - | - | |
Tan08g1608 | 166 | ProSiteProfiles | Zinc finger RING-type profile. | 101 | 143 | IPR001841 | - | |
Tan08g1608 | 166 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 13 | 158 | IPR045899 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g1608 | Tan-Chr8:65449384 | Tan10g0189 | Tan-Chr10:1874735 | 1.60E-24 | dispersed | |
Tan11g0201 | Tan-Chr11:1690175 | Tan08g1608 | Tan-Chr8:65449384 | 1.20E-08 | transposed | |
Tan03g1266 | Tan-Chr3:68944272 | Tan08g1608 | Tan-Chr8:65449384 | 1.70E-45 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1608 | - | - | - | 0.0 |