Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1608 ATGAACACCACCACAGACTCCGGCGGACCAACTTCCTCCGGCGACGTCGGCAGTTTCCCCTACATCGTCGGAATTTCAGTCGGAATCCTCTTCCTTCTCACAACCGTAACAATCGCCACTTATTTTTGCACCAGAACCACCGTTCCGCTGCCGAATCGCCGCCGCCGACCGGAGGAACGGCAGGATTTCGTCGTCGATATCGGACCGGGGCTGGAAGATGAGGCCATTGATGGATATCCGAAGATTCTGTATTCGGAGGCGAAATTGGACGGGAAATTGGAATCCGCCGCCGGTAGCGGCTGCTCGATTTGTTTGGGGGATTATAAGAACGGCGACGTTTTGAGATTGTTGCCGGATTGTAGCCATTTGTTTCATATCGGTTGTATTGATCCGTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGCAGAACGTCGCCGGTGCCGACGCCGATTCCGACCCCCTTGGCGGAGGTGGTTCCGTTTGCCATCGGAAGGAGTTGA 501 55.49 MNTTTDSGGPTSSGDVGSFPYIVGISVGILFLLTTVTIATYFCTRTTVPLPNRRRRPEERQDFVVDIGPGLEDEAIDGYPKILYSEAKLDGKLESAAGSGCSICLGDYKNGDVLRLLPDCSHLFHIGCIDPWLRLNPSCPVCRTSPVPTPIPTPLAEVVPFAIGRS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 65449384 65450001 - Tan0017689.1 Tan08g1608 761500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1608 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 148 IPR013083 -
Tan08g1608 166 SMART ring_2 101 142 IPR001841 -
Tan08g1608 166 CDD RING-H2_EL5-like 101 143 - -
Tan08g1608 166 Pfam Ring finger domain 101 143 IPR001841 -
Tan08g1608 166 SUPERFAMILY RING/U-box 76 149 - -
Tan08g1608 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Tan08g1608 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 158 IPR045899 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1608 Tan-Chr8:65449384 Tan10g0189 Tan-Chr10:1874735 1.60E-24 dispersed
Tan11g0201 Tan-Chr11:1690175 Tan08g1608 Tan-Chr8:65449384 1.20E-08 transposed
Tan03g1266 Tan-Chr3:68944272 Tan08g1608 Tan-Chr8:65449384 1.70E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1608 - - - 0.0