Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1616 ATGAACGATTTGTTCTCCTCTCGCTCTTTCTCTCGCGACAGCCATGTCGTTGAGATGGGTAACTCCTCCTCTTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGATGATGTTGAATCTGTTAAAGACGAGCTCAAGGAGCTTGAGCGACTCTACCAGAACCTCCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCTGTTAAGGACCTCCGATCTCGCATGGATTCCGATGTTGCTCTTGCTCTCAAGAAGGCTAAGCTCATTAAGGTCCGATTGGAGGCCCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCTGGTTGCGGCCCCGGATCTTCCTCTGACCGGACTCGGACTTCTGTGGTCAACGGCTTGAGGAAAAAATTGCAGGATTCCATGGAGAGCTTCAATAATCTCAGGCAGCAGATCTCCTCTGAGTACAGGGAGACCGTGCAGCGAAGGTATTTCACTGTTACTGGTGAAAATCCGGACGAGAAGACCATTGATATCTTGATTTCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGTAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAATCTCAAGGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGTGAGAAACTCGACGACATCGAGAGCCAAGTGAACAGGGCTCATTCTTTTGTCCGAGGCGGCACACAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACAATCATTGCCATCATCATTTTGCTGATCGTTGTCCTCGCGGTTATCCTCAGCCTGAAGCCTTGGAATTGGAATAATGGTAGTAATAGTAGTGGTTCAACCCCGTCAAACCCTTCAACCCCTTAA 945 48.89 MNDLFSSRSFSRDSHVVEMGNSSSSPTAVNLDKFFDDVESVKDELKELERLYQNLHDSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLIVVLAVILSLKPWNWNNGSNSSGSTPSNPSTP 314
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 65581678 65584495 - Tan0004634.1 Tan08g1616 761508
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1616 314 Gene3D - 197 293 - -
Tan08g1616 314 Pfam Syntaxin 33 236 IPR006011 GO:0016020(InterPro)
Tan08g1616 314 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 28 158 - -
Tan08g1616 314 FunFam Syntaxin 132 194 293 - -
Tan08g1616 314 CDD SNARE_syntaxin1-like 200 262 - -
Tan08g1616 314 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Tan08g1616 314 SMART tSNARE_6 196 263 IPR000727 -
Tan08g1616 314 Pfam SNARE domain 237 289 IPR000727 -
Tan08g1616 314 CDD SynN 31 188 IPR006011 GO:0016020(InterPro)
Tan08g1616 314 Gene3D - 29 161 - -
Tan08g1616 314 Coils Coil 204 224 - -
Tan08g1616 314 Coils Coil 126 150 - -
Tan08g1616 314 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Tan08g1616 314 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Tan08g1616 314 Coils Coil 31 65 - -
Tan08g1616 314 PANTHER SYNTAXIN 33 280 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Tan08g1616 314 SMART SynN_4 26 152 IPR006011 GO:0016020(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g0640 Tan-Chr3:61653655 Tan08g1616 Tan-Chr8:65581678 3.50E-62 transposed
Tan03g1990 Tan-Chr3:74930080 Tan08g1616 Tan-Chr8:65581678 8.30E-48 transposed
Tan05g3221 Tan-Chr5:84265978 Tan08g1616 Tan-Chr8:65581678 1.30E-90 transposed
Tan10g1572 Tan-Chr10:25325195 Tan08g1616 Tan-Chr8:65581678 1.50E-65 transposed
Tan03g1265 Tan-Chr3:68938151 Tan08g1616 Tan-Chr8:65581678 2.60E-110 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1616 K08486 - csv:101208931 508.834