Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1621 ATGGAGGAAATCGAAGTACCCCACTACTTCCTCTGCCCGATCTCCCTCGAAATCATGAAAGATCCCGTCACCGTCCCCTCCGGCATCACCTACGACCGCCACTCCATTGAAACCTGGCTCTACTCCAACAAAAACTCCTCCTGCCCCATTACCAAGCTTCCCATCTCCGCCGATTCTGATTCTCTAACCCCTAATCACACTCTCCGCCGCTTAATCCAAGCCTGGTGCACTCTCCATTCTTCCCACGACGGCATCGAACGCTTCCCCACTCCCAAGCCCCCCATCACCAAGCCCCAAATCCTCAAGCTCATCTCCTCTGCTTCCGTTTCCTCTTCCTCTCTTCTCTCCTCCATCCGCCGTCTCCGCTCCCTCGCTGCCGATTCCGAATCCAACCGTCGCTGCATCGAGTCCGCCGGCGCCCCTGAGTTCCTAGCCTCTGTTATCACCAACTCCATCTCCAACCACCACTTCATTCCCTCCCATGAAGCCCTTTCTACTCTCCACAATCTCCACCTCTCCGATTCCAAGCTCAAGAGCTTGACCCACAACCCCGAGTTTTTCGATTCCTTGACCAAGGTCATGGAACAGGGCGCCTACGAGTCAAGAGCGTACGCGGCCTTGGTTTTGAAATCCATGGTGGAAGTCGCCGACCCGATGGATCTAACGTTCTTGAAACCGGAACTGTTTGTGGAGATCGTTGGGATTTTGAAGGATCAGACGTCGCAGCAGAGTTTGAAAGCGGCATTGGGGATTTTGATTGCGGCGTGTCCGTGGGGGAGGAACAGAGTGAAGGCGGTGGAGGCAGGTGGGGTGGAGGCTTTGGTGGAGATTCTGCTGGCAACAGCGCCGGAGAGGAGGGTGTGTGAGATGGCGTTGATGGCGATGGATTTGCTCTGTGGGTGTGCAGATGGGAGAGCGGCGCTGCTGGGTCACGGCGGAGGGATGGCGGTGGTTTCGAAGAAGATTCTGAGAGTGTCGAAAGTGGGGAATGAGAGAGCAGTTAGGATTCTGTTTTCGGTGGCGAAATATTCAGGGAGTCCGGCGGTTTTGATGGAAATGGCGCAGTTGGGGATTGTGGGGAAGCTGTGTTTAGTTCTGCAAGTGGAGAGTGGGAGCAAGACGAAGGAGAAGGCGAAGGAGATTTTGAAGATGCACGCTCGAGTTTGGAGGAATTCGCCTTGTATTCCTTCAAAATTAGCTTCTTCTTATCCTCCAAATTAA 1221 54.3 MEEIEVPHYFLCPISLEIMKDPVTVPSGITYDRHSIETWLYSNKNSSCPITKLPISADSDSLTPNHTLRRLIQAWCTLHSSHDGIERFPTPKPPITKPQILKLISSASVSSSSLLSSIRRLRSLAADSESNRRCIESAGAPEFLASVITNSISNHHFIPSHEALSTLHNLHLSDSKLKSLTHNPEFFDSLTKVMEQGAYESRAYAALVLKSMVEVADPMDLTFLKPELFVEIVGILKDQTSQQSLKAALGILIAACPWGRNRVKAVEAGGVEALVEILLATAPERRVCEMALMAMDLLCGCADGRAALLGHGGGMAVVSKKILRVSKVGNERAVRILFSVAKYSGSPAVLMEMAQLGIVGKLCLVLQVESGSKTKEKAKEILKMHARVWRNSPCIPSKLASSYPPN 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 65799506 65801122 - Tan0006765.1 Tan08g1621 761513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1621 406 CDD RING-Ubox_PUB 7 58 IPR045210 -
Tan08g1621 406 SMART Ubox_2 9 75 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan08g1621 406 SUPERFAMILY RING/U-box 3 79 - -
Tan08g1621 406 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan08g1621 406 Pfam U-box domain 6 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Tan08g1621 406 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 269 313 IPR000225 GO:0005515(InterPro)
Tan08g1621 406 SUPERFAMILY ARM repeat 98 372 IPR016024 -
Tan08g1621 406 Gene3D - 97 393 IPR011989 -
Tan08g1621 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Tan08g1621 406 PANTHER WDSAM1 PROTEIN 2 401 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2214 Tan-Chr6:72549178 Tan08g1621 Tan-Chr8:65799506 3.50E-42 dispersed
Tan07g0873 Tan-Chr7:15125864 Tan08g1621 Tan-Chr8:65799506 4.80E-22 dispersed
Tan08g1621 Tan-Chr8:65799506 Tan09g0688 Tan-Chr9:55786617 5.60E-76 dispersed
Tan01g0691 Tan-Chr1:6631457 Tan08g1621 Tan-Chr8:65799506 1.00E-48 transposed
Tan03g0650 Tan-Chr3:62003067 Tan08g1621 Tan-Chr8:65799506 5.30E-117 transposed
Tan04g1487 Tan-Chr4:19198297 Tan08g1621 Tan-Chr8:65799506 3.50E-47 transposed
Tan04g2057 Tan-Chr4:74651170 Tan08g1621 Tan-Chr8:65799506 1.80E-43 transposed
Tan07g2079 Tan-Chr7:72274347 Tan08g1621 Tan-Chr8:65799506 1.10E-06 transposed
Tan05g0080 Tan-Chr5:739891 Tan08g1621 Tan-Chr8:65799506 4.10E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1621 - - - 0.0