Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1679 ATGTCCTTAAACCACTTCTCTTCAGATAATTTCCACCACCACCCCATCATGCTTAACTCCAAATCCTCCGCCACCGCCGACCACCATCTCCACCACTACAAACAGCCCATGTTCGAGAAACCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAATATTTTCCCCTTTCACCCGCGGCCGGTGGTGATCCGGCTGACAAGGCGGGCTTGCTTCTCAGCTTCGAAGATGAGTCCGGCAAGGTGTGGCGGTTCCGTTACTCTTATTGGAATAGTAGCCAGAGCTATGTGCTGACCAAGGGCTGGAGCCGCTTTGTCAAAGAGAAGCGCCTTGACGCTGGTGATGTCGTCGTTTTTGAACGCCACCCTCGCGATGGTGACAGGCTGTTCATTGGGTGGAAACGCCGCTCGGCGCCGTCTACGGCCGACACCACGGTGGTGCCGGCGAGTAGTGGTGCCGGCAGCGTTGTGGGTTGGACTAGAATGTTTTGTTCTTCAAACCCATATCCTTCTCATCATCATTCTCTTCCTTCACCACCATACCAATCTTCTGATTGTCCTCATGCAGAGTCCTCTGTTCGGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCTGAACCGTCCTCGATGCTCGGTGGCGGGTCCAGTTTATCGGGTCGAGATCCAACCCGCCACAGCTTCTACACGCATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCCCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 843 53.14 MSLNHFSSDNFHHHPIMLNSKSSATADHHLHHYKQPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPAAGGDPADKAGLLLSFEDESGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHPRDGDRLFIGWKRRSAPSTADTTVVPASSGAGSVVGWTRMFCSSNPYPSHHHSLPSPPYQSSDCPHAESSVRSQTVSVGNSKILRLFGVDLECQTDVSEPEPSSMLGGGSSLSGRDPTRHSFYTHYSSPLPHHMDFTFPQDVKQTKYQG 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 67117841 67121028 + Tan0013053.1 Tan08g1679 761571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1679 280 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 222 IPR044800 GO:0003700(InterPro)
Tan08g1679 280 SUPERFAMILY DNA-binding pseudobarrel domain 34 145 IPR015300 -
Tan08g1679 280 MobiDBLite consensus disorder prediction 228 248 - -
Tan08g1679 280 CDD B3_DNA 36 135 IPR003340 GO:0003677(InterPro)
Tan08g1679 280 ProSiteProfiles B3 DNA-binding domain profile. 38 146 IPR003340 GO:0003677(InterPro)
Tan08g1679 280 Gene3D - 28 155 IPR015300 -
Tan08g1679 280 SMART B3_2 38 146 IPR003340 GO:0003677(InterPro)
Tan08g1679 280 Pfam B3 DNA binding domain 38 145 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0156 Tan-Chr7:3960967 Tan08g1679 Tan-Chr8:67117841 1.00E-37 dispersed
Tan08g1679 Tan-Chr8:67117841 Tan11g1931 Tan-Chr11:29672929 8.20E-34 dispersed
Tan08g1679 Tan-Chr8:67117841 Tan06g1845 Tan-Chr6:44839824 1.10E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28189 PF02362 B3 2.00E-30 CL0405 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1679 K09287 - csv:101214938 400.979