Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1697 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTCACTTTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTACAAACACGCACCGAGAACATGTAGAAACTTTATTGAGCTTTCTAGGCGAGGTTATTACGACAATGTCAAATTTCACCGGATTATTAAGGATTTTATAGTTCAAGGTGGCGATCCCACAGGAACTGGACGAGGTGGGGAATCTATTTATGGTAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCATACTGGAGCTGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTAGATGGGAAACACTCCATCTTTGGACGAGTTTGTAGTGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGACCCATCCATGATGTGAAAATACTACGGGCATCAGTTAAAGACTAA 495 43.23 MWASAEGGPPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCSGMEIIKRLGSVQTDNNDRPIHDVKILRASVKD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 68331859 68335541 + Tan0008112.1 Tan08g1697 761589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1697 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Tan08g1697 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 159 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Tan08g1697 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 162 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Tan08g1697 164 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Tan08g1697 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Tan08g1697 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Tan08g1697 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Tan08g1697 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Tan08g1697 164 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Tan08g1697 164 SUPERFAMILY Cyclophilin-like 11 162 IPR029000 -
Tan08g1697 164 PIRSF Peptidylpro_ismrse 3 164 IPR024936 GO:0003755(InterPro)
Tan08g1697 164 FunFam Peptidyl-prolyl cis-trans isomerase 2 164 - -
Tan08g1697 164 Gene3D - 3 164 IPR029000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1697 K12733 - - csv:101222111 332.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g4605 Tan-Chr1:112033717 Tan08g1697 Tan-Chr8:68331859 5.10E-39 dispersed
Tan08g1193 Tan-Chr8:30205793 Tan08g1697 Tan-Chr8:68331859 1.50E-43 dispersed
Tan08g1194 Tan-Chr8:30205793 Tan08g1697 Tan-Chr8:68331859 1.50E-43 dispersed
Tan08g1697 Tan-Chr8:68331859 Tan10g0333 Tan-Chr10:2735956 8.20E-42 dispersed
Tan08g1697 Tan-Chr8:68331859 Tan08g1698 Tan-Chr8:68331859 6.40E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g950 . . . . Bpe04g01516 . Bma04g01568 . Cmo06g00493 . . . . . . . Cpe08g00998 . . . . . . . . . . . . . . Cone3ag0170 . . . . . . Cme04g02374 . Blo09g00488 Bda03g01656 . . . . . Sed02g0502 . . Cma06g00492 Cma14g00328 Car06g00431 Car14g00298 Cpe03g00282 . Bhi11g02339 Tan08g1697 Cmetu05g0569 Lac10g2836 Hepe05g0401 . . Cla10g01783 Cam10g1838 Cec10g1892 Cco10g1866 Clacu10g1853 Cmu10g2603 Cre10g1992 Lsi03g01872 Csa03g03444 Chy04g01907 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan02g1421 . 1 1043 U-box Gene Family AT5G15400 76.4 0.0e+00 1578.5
Tan06g1105 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan06g1106 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan05g1595 . 206 839 U-box Gene Family AT2G23140 65.8 2.8e-122 436.8
Tan02g2190 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan02g2191 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan04g0074 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0075 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0076 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0077 . 1 374 U-box Gene Family AT1G24330 63.5 1.3e-129 461.5
Tan02g2190 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan02g2191 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan04g0074 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0075 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0076 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0077 . 1 374 U-box Gene Family AT1G67530 63.0 1.4e-123 441.4
Tan03g2387 . 1 360 U-box Gene Family AT4G21350 63.2 1.1e-121 434.1
Tan07g2078 . 134 456 U-box Gene Family AT3G07360 56.1 5.0e-83 305.4
Tan06g1828 . 260 455 U-box Gene Family AT1G71020 69.7 3.3e-75 280.0
Tan04g1579 . 267 454 U-box Gene Family AT1G71020 72.5 4.8e-74 276.2
Tan11g1796 . 712 904 U-box Gene Family AT1G71020 54.8 3.9e-52 203.4
Tan04g0628 . 250 417 U-box Gene Family AT1G71020 59.6 1.6e-48 191.4
Tan05g0377 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan05g0378 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan01g2462 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Tan04g1579 . 5 658 U-box Gene Family AT1G23030 56.3 1.3e-111 401.4
Tan06g1828 . 5 659 U-box Gene Family AT1G23030 56.9 8.2e-111 398.7
Tan05g0377 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan05g0378 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan01g2462 . 93 632 U-box Gene Family AT2G28830 59.2 5.6e-101 365.9
Tan01g2462 . 1 634 U-box Gene Family AT3G46510 70.1 3.5e-168 589.3
Tan05g0377 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan05g0378 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan04g0628 . 7 624 U-box Gene Family AT3G46510 59.0 9.7e-126 448.4
Tan04g0628 . 1 626 U-box Gene Family AT3G54850 68.7 3.1e-166 582.8
Tan05g0377 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan05g0378 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan01g2462 . 8 639 U-box Gene Family AT3G54850 54.5 6.5e-103 372.5
Tan05g1058 . 28 650 U-box Gene Family AT5G42340 60.0 3.6e-120 429.9
Tan03g0722 . 9 672 U-box Gene Family AT5G01830 57.8 1.5e-203 706.8
Tan05g2530 . 1 716 U-box Gene Family AT1G29340 63.8 2.9e-248 855.5
Tan04g2057 . 27 442 U-box Gene Family AT5G37490 51.6 3.1e-112 402.9
Tan08g1621 . 2 404 U-box Gene Family AT3G52450 52.0 9.5e-122 434.5
Tan03g0650 . 11 424 U-box Gene Family AT3G52450 53.6 4.7e-121 432.2
Tan08g1621 . 2 404 U-box Gene Family AT2G35930 55.1 2.5e-124 443.0
Tan03g0650 . 10 424 U-box Gene Family AT2G35930 53.0 7.1e-119 424.9
Tan01g0691 . 7 422 U-box Gene Family AT3G19380 65.0 1.2e-148 523.9
Tan01g0691 . 1 422 U-box Gene Family AT1G49780 65.0 6.6e-152 534.6
Tan03g1327 . 1 411 U-box Gene Family AT5G64660 54.5 7.1e-122 434.9
Tan03g1327 . 1 411 U-box Gene Family AT5G09800 51.3 9.0e-106 381.3
Tan01g4675 . 1 455 U-box Gene Family AT3G49810 63.4 3.6e-156 548.9
Tan02g1715 . 1 452 U-box Gene Family AT3G49810 62.8 8.2e-153 537.7
Tan01g4675 . 1 455 U-box Gene Family AT5G65920 62.7 4.1e-152 535.4
Tan02g1715 . 1 452 U-box Gene Family AT5G65920 63.8 5.3e-152 535.0
Tan01g0233 . 113 605 U-box Gene Family AT3G49060 50.3 2.4e-131 467.2
Tan10g0201 . 1 875 U-box Gene Family AT2G45910 52.0 1.1e-232 803.9
Tan06g0152 . 218 487 U-box Gene Family AT2G45910 51.9 1.0e-76 285.8
Tan08g0049 . 2 728 U-box Gene Family AT2G19410 50.8 1.6e-215 746.9
Tan07g0187 . 28 606 U-box Gene Family AT4G25160 55.2 2.6e-168 590.1
Tan11g0585 . 1 552 U-box Gene Family AT5G40140 55.3 1.4e-98 357.8
Tan05g2040 . 29 498 U-box Gene Family AT5G40140 51.9 4.1e-53 206.8
Tan01g2750 . 4 937 U-box Gene Family AT1G76390 53.5 8.2e-260 894.0
Tan01g2751 . 4 754 U-box Gene Family AT1G76390 53.7 3.4e-205 712.6
Tan01g2750 . 13 937 U-box Gene Family AT1G20780 53.6 5.4e-264 907.9
Tan01g2751 . 4 754 U-box Gene Family AT1G20780 53.2 5.7e-205 711.8
Tan02g2190 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan02g2191 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan04g0074 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0075 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0076 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0077 . 1 557 U-box Gene Family AT1G27910 51.1 1.9e-141 500.7
Tan03g1663 . 1 593 U-box Gene Family AT5G67530 75.8 1.4e-264 909.4
Tan10g0333 . 3 157 U-box Gene Family AT5G67530 52.9 9.9e-45 179.1
Tan08g1697 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan08g1698 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan07g0187 . 10 605 U-box Gene Family AT5G61560 50.4 2.1e-151 533.9
Tan07g0187 . 96 606 U-box Gene Family AT5G61550 58.6 3.7e-170 596.3
Tan07g0187 . 126 605 U-box Gene Family AT5G51270 57.7 3.3e-152 536.6
Tan10g0634 . 1 516 U-box Gene Family AT1G04510 70.7 9.5e-209 723.8
Tan10g0634 . 1 485 U-box Gene Family AT2G33340 69.4 2.5e-195 679.1
Tan07g2079 . 10 278 U-box Gene Family AT3G07370 66.9 5.9e-101 364.8
Tan02g1421 . 1 1043 U-box Gene Family AT5G15400 76.4 0.0e+00 1578.5
Tan06g1105 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan06g1106 . 1 776 U-box Gene Family AT3G54790 52.6 1.1e-136 485.0
Tan05g1595 . 206 839 U-box Gene Family AT2G23140 65.8 2.8e-122 436.8
Tan02g2190 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan02g2191 . 1 776 U-box Gene Family AT1G24330 60.4 3.1e-248 855.5
Tan04g0074 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0075 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0076 . 1 584 U-box Gene Family AT1G24330 66.3 7.1e-213 738.0
Tan04g0077 . 1 374 U-box Gene Family AT1G24330 63.5 1.3e-129 461.5
Tan02g2190 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan02g2191 . 1 775 U-box Gene Family AT1G67530 60.6 1.4e-245 846.7
Tan04g0074 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0075 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0076 . 1 584 U-box Gene Family AT1G67530 65.6 1.9e-205 713.4
Tan04g0077 . 1 374 U-box Gene Family AT1G67530 63.0 1.4e-123 441.4
Tan03g2387 . 1 360 U-box Gene Family AT4G21350 63.2 1.1e-121 434.1
Tan07g2078 . 134 456 U-box Gene Family AT3G07360 56.1 5.0e-83 305.4
Tan06g1828 . 260 455 U-box Gene Family AT1G71020 69.7 3.3e-75 280.0
Tan04g1579 . 267 454 U-box Gene Family AT1G71020 72.5 4.8e-74 276.2
Tan11g1796 . 712 904 U-box Gene Family AT1G71020 54.8 3.9e-52 203.4
Tan04g0628 . 250 417 U-box Gene Family AT1G71020 59.6 1.6e-48 191.4
Tan05g0377 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan05g0378 . 256 432 U-box Gene Family AT1G71020 56.8 7.7e-48 189.1
Tan01g2462 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Tan04g1579 . 5 658 U-box Gene Family AT1G23030 56.3 1.3e-111 401.4
Tan06g1828 . 5 659 U-box Gene Family AT1G23030 56.9 8.2e-111 398.7
Tan05g0377 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan05g0378 . 93 646 U-box Gene Family AT2G28830 51.5 6.0e-103 372.5
Tan01g2462 . 93 632 U-box Gene Family AT2G28830 59.2 5.6e-101 365.9
Tan01g2462 . 1 634 U-box Gene Family AT3G46510 70.1 3.5e-168 589.3
Tan05g0377 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan05g0378 . 3 636 U-box Gene Family AT3G46510 67.0 1.2e-165 580.9
Tan04g0628 . 7 624 U-box Gene Family AT3G46510 59.0 9.7e-126 448.4
Tan04g0628 . 1 626 U-box Gene Family AT3G54850 68.7 3.1e-166 582.8
Tan05g0377 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan05g0378 . 13 644 U-box Gene Family AT3G54850 55.8 5.1e-116 416.0
Tan01g2462 . 8 639 U-box Gene Family AT3G54850 54.5 6.5e-103 372.5
Tan05g1058 . 28 650 U-box Gene Family AT5G42340 60.0 3.6e-120 429.9
Tan03g0722 . 9 672 U-box Gene Family AT5G01830 57.8 1.5e-203 706.8
Tan05g2530 . 1 716 U-box Gene Family AT1G29340 63.8 2.9e-248 855.5
Tan04g2057 . 27 442 U-box Gene Family AT5G37490 51.6 3.1e-112 402.9
Tan08g1621 . 2 404 U-box Gene Family AT3G52450 52.0 9.5e-122 434.5
Tan03g0650 . 11 424 U-box Gene Family AT3G52450 53.6 4.7e-121 432.2
Tan08g1621 . 2 404 U-box Gene Family AT2G35930 55.1 2.5e-124 443.0
Tan03g0650 . 10 424 U-box Gene Family AT2G35930 53.0 7.1e-119 424.9
Tan01g0691 . 7 422 U-box Gene Family AT3G19380 65.0 1.2e-148 523.9
Tan01g0691 . 1 422 U-box Gene Family AT1G49780 65.0 6.6e-152 534.6
Tan03g1327 . 1 411 U-box Gene Family AT5G64660 54.5 7.1e-122 434.9
Tan03g1327 . 1 411 U-box Gene Family AT5G09800 51.3 9.0e-106 381.3
Tan01g4675 . 1 455 U-box Gene Family AT3G49810 63.4 3.6e-156 548.9
Tan02g1715 . 1 452 U-box Gene Family AT3G49810 62.8 8.2e-153 537.7
Tan01g4675 . 1 455 U-box Gene Family AT5G65920 62.7 4.1e-152 535.4
Tan02g1715 . 1 452 U-box Gene Family AT5G65920 63.8 5.3e-152 535.0
Tan01g0233 . 113 605 U-box Gene Family AT3G49060 50.3 2.4e-131 467.2
Tan10g0201 . 1 875 U-box Gene Family AT2G45910 52.0 1.1e-232 803.9
Tan06g0152 . 218 487 U-box Gene Family AT2G45910 51.9 1.0e-76 285.8
Tan08g0049 . 2 728 U-box Gene Family AT2G19410 50.8 1.6e-215 746.9
Tan07g0187 . 28 606 U-box Gene Family AT4G25160 55.2 2.6e-168 590.1
Tan11g0585 . 1 552 U-box Gene Family AT5G40140 55.3 1.4e-98 357.8
Tan05g2040 . 29 498 U-box Gene Family AT5G40140 51.9 4.1e-53 206.8
Tan01g2750 . 4 937 U-box Gene Family AT1G76390 53.5 8.2e-260 894.0
Tan01g2751 . 4 754 U-box Gene Family AT1G76390 53.7 3.4e-205 712.6
Tan01g2750 . 13 937 U-box Gene Family AT1G20780 53.6 5.4e-264 907.9
Tan01g2751 . 4 754 U-box Gene Family AT1G20780 53.2 5.7e-205 711.8
Tan02g2190 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan02g2191 . 1 778 U-box Gene Family AT1G27910 63.4 7.5e-271 930.6
Tan04g0074 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0075 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0076 . 1 767 U-box Gene Family AT1G27910 55.3 3.3e-218 755.7
Tan04g0077 . 1 557 U-box Gene Family AT1G27910 51.1 1.9e-141 500.7
Tan03g1663 . 1 593 U-box Gene Family AT5G67530 75.8 1.4e-264 909.4
Tan10g0333 . 3 157 U-box Gene Family AT5G67530 52.9 9.9e-45 179.1
Tan08g1697 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan08g1698 . 12 162 U-box Gene Family AT5G67530 50.3 7.8e-42 169.5
Tan07g0187 . 10 605 U-box Gene Family AT5G61560 50.4 2.1e-151 533.9
Tan07g0187 . 96 606 U-box Gene Family AT5G61550 58.6 3.7e-170 596.3
Tan07g0187 . 126 605 U-box Gene Family AT5G51270 57.7 3.3e-152 536.6
Tan10g0634 . 1 516 U-box Gene Family AT1G04510 70.7 9.5e-209 723.8
Tan10g0634 . 1 485 U-box Gene Family AT2G33340 69.4 2.5e-195 679.1
Tan07g2079 . 10 278 U-box Gene Family AT3G07370 66.9 5.9e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008421 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35