Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1763 ATGGCTACTTCCGGCCGCCACCCCATATACCGAGGCGTTCGGCGTCGCAACACCGGCAAATGGGTCTCCGAGATTCGCGAGCCAAGGAAGCCTAATCGCATTTGGTTGGGAACCTTCCCGACCGCCGAAATGGCGGCCGTTGCTTACGACGTTGCTGCCCTTGCCCTCAAGGGCCAGGACGCCGAGCTCAATTTCCCTAATTCGGCCTCGTCTCTCCCCGTCCCTGCTTCTCGGTCGCCGTCTGATATTCAGGCGGCGGCTGCCTCTGCCGCCGCTGCGCTTGGAGCGGCAGCAGCGGCGATGGAAGCGCGGAGTGGTTCTCGCCGTGGCTGTAGTAGTTCGTCGGGAACTAATTTTGGTGACGGATATGGAGGAAGATATGATCAAGGGGAGGTGGAAAATCACTTCGTTGATGAGGACTTGATCTTTGATATGCCTAATGTTTTAATGAATATGGCTGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCACGCCGGAGACGATGACGGAGACGACGATGGTGACCAAAACCTTTGGAGTTTTTCCTAA 555 56.04 MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARSGSRRGCSSSSGTNFGDGYGGRYDQGEVENHFVDEDLIFDMPNVLMNMAEGMLLSPPRFNNHAGDDDGDDDGDQNLWSFS 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 69611163 69611932 - Tan0012541.1 Tan08g1763 761655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1763 184 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1763 184 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1763 184 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1763 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 183 IPR045277 GO:0003700(InterPro)
Tan08g1763 184 SMART rav1_2 9 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1763 184 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677(InterPro)
Tan08g1763 184 MobiDBLite consensus disorder prediction 105 124 - -
Tan08g1763 184 Pfam AP2 domain 9 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1763 184 FunFam Ethylene-responsive transcription factor 2 8 67 - -
Tan08g1763 184 MobiDBLite consensus disorder prediction 162 184 - -
Tan08g1763 184 CDD AP2 8 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1763 184 Gene3D AP2/ERF domain 9 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1917 Tan-Chr1:20650398 Tan08g1763 Tan-Chr8:69611163 2.10E-37 dispersed
Tan03g1178 Tan-Chr3:68098653 Tan08g1763 Tan-Chr8:69611163 1.00E-35 dispersed
Tan07g1704 Tan-Chr7:68393095 Tan08g1763 Tan-Chr8:69611163 1.40E-35 dispersed
Tan07g1705 Tan-Chr7:68415741 Tan08g1763 Tan-Chr8:69611163 8.20E-32 dispersed
Tan08g1763 Tan-Chr8:69611163 Tan10g0052 Tan-Chr10:874216 1.20E-25 dispersed
Tan08g1762 Tan-Chr8:69584764 Tan08g1763 Tan-Chr8:69611163 3.40E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28200 PF00847 AP2 2.30E-12 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1763 - - - 0.0