Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1763 | ATGGCTACTTCCGGCCGCCACCCCATATACCGAGGCGTTCGGCGTCGCAACACCGGCAAATGGGTCTCCGAGATTCGCGAGCCAAGGAAGCCTAATCGCATTTGGTTGGGAACCTTCCCGACCGCCGAAATGGCGGCCGTTGCTTACGACGTTGCTGCCCTTGCCCTCAAGGGCCAGGACGCCGAGCTCAATTTCCCTAATTCGGCCTCGTCTCTCCCCGTCCCTGCTTCTCGGTCGCCGTCTGATATTCAGGCGGCGGCTGCCTCTGCCGCCGCTGCGCTTGGAGCGGCAGCAGCGGCGATGGAAGCGCGGAGTGGTTCTCGCCGTGGCTGTAGTAGTTCGTCGGGAACTAATTTTGGTGACGGATATGGAGGAAGATATGATCAAGGGGAGGTGGAAAATCACTTCGTTGATGAGGACTTGATCTTTGATATGCCTAATGTTTTAATGAATATGGCTGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCACGCCGGAGACGATGACGGAGACGACGATGGTGACCAAAACCTTTGGAGTTTTTCCTAA | 555 | 56.04 | MATSGRHPIYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAMEARSGSRRGCSSSSGTNFGDGYGGRYDQGEVENHFVDEDLIFDMPNVLMNMAEGMLLSPPRFNNHAGDDDGDDDGDQNLWSFS | 184 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 69611163 | 69611932 | - | Tan0012541.1 | Tan08g1763 | 761655 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1763 | 184 | PRINTS | Ethylene responsive element binding protein signature | 32 | 48 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan08g1763 | 184 | PRINTS | Ethylene responsive element binding protein signature | 10 | 21 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan08g1763 | 184 | ProSiteProfiles | AP2/ERF domain profile. | 9 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan08g1763 | 184 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 5 | 183 | IPR045277 | GO:0003700(InterPro) | |
Tan08g1763 | 184 | SMART | rav1_2 | 9 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan08g1763 | 184 | SUPERFAMILY | DNA-binding domain | 9 | 68 | IPR016177 | GO:0003677(InterPro) | |
Tan08g1763 | 184 | MobiDBLite | consensus disorder prediction | 105 | 124 | - | - | |
Tan08g1763 | 184 | Pfam | AP2 domain | 9 | 58 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan08g1763 | 184 | FunFam | Ethylene-responsive transcription factor 2 | 8 | 67 | - | - | |
Tan08g1763 | 184 | MobiDBLite | consensus disorder prediction | 162 | 184 | - | - | |
Tan08g1763 | 184 | CDD | AP2 | 8 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Tan08g1763 | 184 | Gene3D | AP2/ERF domain | 9 | 68 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1917 | Tan-Chr1:20650398 | Tan08g1763 | Tan-Chr8:69611163 | 2.10E-37 | dispersed | |
Tan03g1178 | Tan-Chr3:68098653 | Tan08g1763 | Tan-Chr8:69611163 | 1.00E-35 | dispersed | |
Tan07g1704 | Tan-Chr7:68393095 | Tan08g1763 | Tan-Chr8:69611163 | 1.40E-35 | dispersed | |
Tan07g1705 | Tan-Chr7:68415741 | Tan08g1763 | Tan-Chr8:69611163 | 8.20E-32 | dispersed | |
Tan08g1763 | Tan-Chr8:69611163 | Tan10g0052 | Tan-Chr10:874216 | 1.20E-25 | dispersed | |
Tan08g1762 | Tan-Chr8:69584764 | Tan08g1763 | Tan-Chr8:69611163 | 3.40E-21 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28200 | PF00847 | AP2 | 2.30E-12 | CL0081 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1763 | - | - | - | 0.0 |