Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1770 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAGCCAGGGAACCGGGTTTGAAGAAGCCCCGACTGGCCGACGAGGCTGAGCGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCGGGGACCAATATCGGGCAACCCAGATTTCGACCAAGTGAGAGAGATTCGGGTAGCAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAACCGCCGCAGCATCAGGAGCTTGTCAGCCAGTACAGGACCGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCGAAAGCCATCTCTGCCACAGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCAGCACTTTATCTGTTGGACAGTATTGTGAAGAATATTGGAAGAGATTACATAAAATACTTTGCAGCAAAACTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACCCTTCTGTACATCCAAGTATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGGTTATCGAGAAAGAACTTAGCTTCATGCCCAGCGGTAGTTCTTCTTCTGGGACCATAACCCCGAAGCCAGATTTGCAGGCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTATTGCAACAACAAATGTAACTCCGGATGTTGCCCAAGCCAAAATTAGCACTGGACGTCCATGGGGGGGTGCTCCAATGAAAGTGCTTGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATGGCACAAGAGAAAAACATCACGGCTGCATATGCAGACTACGAATATGGTTCAGAACTTTCAAGGGCTCCAGGTATCGGAAGAAGAGTTGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCAGAGAAGATATCTGGCCAAAGGAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCTAACACTGGTGCACGTCTGCTGCCCATGCAAAATTTTTCAACCAGCAGCAGCAACCGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCATCTGCCATTACCAGTACCACTGGAAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGCCATTAAGCATACGGGATACTGGGGGAAGTGTTGATAGAGAAGCTTCTAGTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGCCAATATCTCTGGATGGGCTGAGAGGTGGGGTTCCTAGAAATAATTCAGCTCAGTTAGGAGGTTATGGTGCCACTCTTACTACATTGTCAGGTGCTAACTCTTCTGTGGATCAAATGGGAGGTCGACCTCCAATCACATCATCTAATATTGGAGCTTCAGGACATGGGTTTCTGAACAAAGGAGGTTCAGGGTTTATTGGCCATCAGAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAGCCACCCTTGCACCAACGTTCCCCTTCACCATTGTTAGTGGATCACGTTTCTCATCAAATGCCCGACCATAAAACTACTTCGTTTTCTAATCTTGACCCACGTAGAAGGCATATACAGGATGCTTCCCTTGGCCTGCATCCCAGCGTTCGGCCAGATAACCTTCAAAAACCACAGCATCAGGACCTTCAAGCTTCAGCTTCATCCATACCTGCTTCTCAATCCAGACACCAGTTCTCTTTATCTGAGTCACTAAAACCTGACGTCAGACAGTTAGAACTCTCTAGTCAGCATGCAGTATCAATTCCAGGCACTGATGTTGGACCTCCCTCATCAGCTGGGACAGTTCAAGATCGTTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTCTCCAACCATTCAATAACCAGTAGCATGCAGCAGAATATTAGCTTCCAAGATGTGGGAAACATGCAACTCCGTACAAACATCAAACCTCCTCTACCAAGCCGGTCTCCTCCTGCCCGTACTCAGTCTACATTCTCAGAGCCAAAGACTGTGGGAGAATCTTCATTACGTCCTCCATCTATTGAAAACCCATCAGCTCTTGTTAAGCTATCTCAAACTAAGGTAGAAGAGACACCGTTGCCATCTGATCCGCTTCCACCTTCATCTCCTATGAATAGTGCATCCACTGAAACTTCAAATGTGGTAAACGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATCTGCTTCAAAAGGAGAATTAACAAATAGCGTGACATCCCAGATGCCTTCACAGTCTGAAAATTTGAAGTCAGGTGATGCTGTGACGTGTTCTATACCAGTTCCTTCCATCCCTGCTACTTCTTCCGGTAAATCATCTATGAGACTTGAGTCACCTTCAAAAGCTGCTGCTAAGAGGTCCACTAGTCCACCTCCATCCGCCACAACTGAGATAAACAACCTCATAGGCTTTGAATTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATATCAATGTAAGATCTGTGGTCTGAGACTGAAACTTGAAGAACAGTTGGATACACACTTGCAGTGGCACACGTTAAGAACTGAGGCAGACAACTCAAATAGGACACCAAGATGGTATCCAAGTTCAGATGATTGGGTTTCTGGAAATGCTAGACTTTTACTTGGCGTTGCCACTTCTCTGGACAAATCCGACATGATGGAAGAAGATAACAAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCGTGTGTTTTATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAATTGGGTAAGTGGATGTTCAAAGGAGCAACGTATATCACGATCCCATCAGCGAGTAGTGAGGTAGGAAGCACAAACGAACAAGTTGCGAGAGGAGGACCCATTGTGCATACAAATTGTATGACTGAAAGTTCAGTATATGACTTGGGACTGGCAACTGATATTAAGATGGAGATGGATGTATGA 3255 45.84 MEMESSRRPFDRAREPGLKKPRLADEAERGGNINGRPFPQRPVVSGTNIGQPRFRPSERDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPALYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQVIEKELSFMPSGSSSSGTITPKPDLQAQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIATTNVTPDVAQAKISTGRPWGGAPMKVLDIQRPLRDAPNDMAQEKNITAAYADYEYGSELSRAPGIGRRVVDEGRDKPWSSAGSNLAEKISGQRNGFNIKLGYENYPAPKSANTGARLLPMQNFSTSSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGASAITSTTGKDQWTPEDSDNSGIENKPLSIRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQVQEPISLDGLRGGVPRNNSAQLGGYGATLTTLSGANSSVDQMGGRPPITSSNIGASGHGFLNKGGSGFIGHQRFPSRSVAFPSGQPPLHQRSPSPLLVDHVSHQMPDHKTTSFSNLDPRRRHIQDASLGLHPSVRPDNLQKPQHQDLQASASSIPASQSRHQFSLSESLKPDVRQLELSSQHAVSIPGTDVGPPSSAGTVQDRLPAEILGEPSTSSLLAAVMKSGIFSNHSITSSMQQNISFQDVGNMQLRTNIKPPLPSRSPPARTQSTFSEPKTVGESSLRPPSIENPSALVKLSQTKVEETPLPSDPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSVTSQMPSQSENLKSGDAVTCSIPVPSIPATSSGKSSMRLESPSKAAAKRSTSPPPSATTEINNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEADNSNRTPRWYPSSDDWVSGNARLLLGVATSLDKSDMMEEDNKPMVPADEDQFACVLCGELFEDFYSQELGKWMFKGATYITIPSASSEVGSTNEQVARGGPIVHTNCMTESSVYDLGLATDIKMEMDV 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 69708160 69715920 - Tan0002438.1 Tan08g1770 761662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1770 1084 SMART 558neu5 80 202 IPR006569 -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 833 853 - -
Tan08g1770 1084 Pfam CID domain 87 195 IPR006569 -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 453 477 - -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 1 29 - -
Tan08g1770 1084 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 730 808 - -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 794 808 - -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 207 227 - -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 833 894 - -
Tan08g1770 1084 Gene3D - 72 202 IPR008942 -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 743 783 - -
Tan08g1770 1084 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 58 1081 IPR045154 GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Tan08g1770 1084 MobiDBLite consensus disorder prediction 413 441 - -
Tan08g1770 1084 SUPERFAMILY ENTH/VHS domain 77 204 IPR008942 -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 608 646 - -
Tan08g1770 1084 ProSiteProfiles Zinc finger C2H2 type domain profile. 928 955 IPR013087 -
Tan08g1770 1084 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Tan08g1770 1084 ProSitePatterns Zinc finger C2H2 type domain signature. 930 950 IPR013087 -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 63 77 - -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 617 646 - -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 413 477 - -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 861 894 - -
Tan08g1770 1084 MobiDBLite consensus disorder prediction 1 77 - -
Tan08g1770 1084 CDD CID_Pcf11 82 194 IPR047415 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g3111 Tan-Chr5:83237294 Tan08g1770 Tan-Chr8:69708160 3.10E-30 dispersed
Tan08g1770 Tan-Chr8:69708160 Tan08g1771 Tan-Chr8:69708160 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1770 K14400 - csv:101223169 1786.93