Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g1771 | ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAGCCAGGGAACCGGGTTTGAAGAAGCCCCGACTGGCCGACGAGGCTGAGCGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCGGGGACCAATATCGGGCAACCCAGATTTCGACCAAGTGAGAGAGATTCGGGTAGCAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAACCGCCGCAGCATCAGGAGCTTGTCAGCCAGTACAGGACCGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCGAAAGCCATCTCTGCCACAGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCAGCACTTTATCTGTTGGACAGTATTGTGAAGAATATTGGAAGAGATTACATAAAATACTTTGCAGCAAAACTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACCCTTCTGTACATCCAAGTATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGGTTATCGAGAAAGAACTTAGCTTCATGCCCAGCGGTAGTTCTTCTTCTGGGACCATAACCCCGAAGCCAGATTTGCAGGCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTATTGCAACAACAAATGTAACTCCGGATGTTGCCCAAGCCAAAATTAGCACTGGACGTCCATGGGGGGGTGCTCCAATGAAAGTGCTTGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATGGCACAAGAGAAAAACATCACGGCTGCATATGCAGACTACGAATATGGTTCAGAACTTTCAAGGGCTCCAGGTATCGGAAGAAGAGTTGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCAGAGAAGATATCTGGCCAAAGGAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCTAACACTGGTGCACGTCTGCTGCCCATGCAAAATTTTTCAACCAGCAGCAGCAACCGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCATCTGCCATTACCAGTACCACTGGAAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGCCATTAAGCATACGGGATACTGGGGGAAGTGTTGATAGAGAAGCTTCTAGTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGCCAATATCTCTGGATGGGCTGAGAGGTGGGGTTCCTAGAAATAATTCAGCTCAGTTAGGAGGTTATGGTGCCACTCTTACTACATTGTCAGGTGCTAACTCTTCTGTGGATCAAATGGGAGGTCGACCTCCAATCACATCATCTAATATTGGAGCTTCAGGACATGGGTTTCTGAACAAAGGAGGTTCAGGGTTTATTGGCCATCAGAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAGCCACCCTTGCACCAACGTTCCCCTTCACCATTGTTAGTGGATCACGTTTCTCATCAAATGCCCGACCATAAAACTACTTCGTTTTCTAATCTTGACCCACGTAGAAGGCATATACAGGATGCTTCCCTTGGCCTGCATCCCAGCGTTCGGCCAGATAACCTTCAAAAACCACAGCATCAGGACCTTCAAGCTTCAGCTTCATCCATACCTGCTTCTCAATCCAGACACCAGTTCTCTTTATCTGAGTCACTAAAACCTGACGTCAGACAGTTAGAACTCTCTAGTCAGCATGCAGTATCAATTCCAGGCACTGATGTTGGACCTCCCTCATCAGCTGGGACAGTTCAAGATCGTTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTCTCCAACCATTCAATAACCAGTAGCATGCAGCAGAATATTAGCTTCCAAGATGTGGGAAACATGCAACTCCGTACAAACATCAAACCTCCTCTACCAAGCCGGTCTCCTCCTGCCCGTACTCAGTCTACATTCTCAGAGCCAAAGACTGTGGGAGAATCTTCATTACGTCCTCCATCTATTGAAAACCCATCAGCTCTTGTTAAGCTATCTCAAACTAAGGTAGAAGAGACACCGTTGCCATCTGATCCGCTTCCACCTTCATCTCCTATGAATAGTGCATCCACTGAAACTTCAAATGTGGTAAACGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATCTGCTTCAAAAGGAGAATTAACAAATAGCGTGACATCCCAGATGCCTTCACAGTCTGAAAATTTGAAGTCAGGTGATGCTGTGACGTGTTCTATACCAGTTCCTTCCATCCCTGCTACTTCTTCCGGTAAATCATCTATGAGACTTGAGTCACCTTCAAAAGCTGCTGCTAAGAGGTCCACTAGTCCACCTCCATCCGCCACAACTGAGATAAACAACCTCATAGGCTTTGAATTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATATCAATGTAAGATCTGTGGTCTGAGACTGAAACTTGAAGAACAGTTGGATACACACTTGCAGTGGCACACGTTAAGAACTGAGGCAGACAACTCAAATAGGACACCAAGATGGTATCCAAGTTCAGATGATTGGGTTTCTGGAAATGCTAGACTTTTACTTGGCGTTGCCACTTCTCTGGACAAATCCGACATGATGGAAGAAGATAACAAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCGTGTGTTTTATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAATTGGGTAAGTGGATGTTCAAAGGAGCAACGTATATCACGATCCCATCAGCGAGTAGTGAGGTAGGAAGCACAAACGAACAAGTTGCGAGAGGAGGACCCATTGTGCATACAAATTGTATGACTGAAAGTTCAGTATATGACTTGGGACTGGCAACTGATATTAAGATGGTATTGTTCTTGGTTCTTTATACTTTTGCAGAACTTGATTTGGTTTCACTATCATCTATTGATCTCCCTTATGATTTTATGTGCTGTTCCTGGACTTTTTTCCCTTCTTTTTTTTATGGAACGATGGAGTGA | 3372 | 45.4 | MEMESSRRPFDRAREPGLKKPRLADEAERGGNINGRPFPQRPVVSGTNIGQPRFRPSERDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPALYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQVIEKELSFMPSGSSSSGTITPKPDLQAQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIATTNVTPDVAQAKISTGRPWGGAPMKVLDIQRPLRDAPNDMAQEKNITAAYADYEYGSELSRAPGIGRRVVDEGRDKPWSSAGSNLAEKISGQRNGFNIKLGYENYPAPKSANTGARLLPMQNFSTSSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGASAITSTTGKDQWTPEDSDNSGIENKPLSIRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQVQEPISLDGLRGGVPRNNSAQLGGYGATLTTLSGANSSVDQMGGRPPITSSNIGASGHGFLNKGGSGFIGHQRFPSRSVAFPSGQPPLHQRSPSPLLVDHVSHQMPDHKTTSFSNLDPRRRHIQDASLGLHPSVRPDNLQKPQHQDLQASASSIPASQSRHQFSLSESLKPDVRQLELSSQHAVSIPGTDVGPPSSAGTVQDRLPAEILGEPSTSSLLAAVMKSGIFSNHSITSSMQQNISFQDVGNMQLRTNIKPPLPSRSPPARTQSTFSEPKTVGESSLRPPSIENPSALVKLSQTKVEETPLPSDPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSVTSQMPSQSENLKSGDAVTCSIPVPSIPATSSGKSSMRLESPSKAAAKRSTSPPPSATTEINNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEADNSNRTPRWYPSSDDWVSGNARLLLGVATSLDKSDMMEEDNKPMVPADEDQFACVLCGELFEDFYSQELGKWMFKGATYITIPSASSEVGSTNEQVARGGPIVHTNCMTESSVYDLGLATDIKMVLFLVLYTFAELDLVSLSSIDLPYDFMCCSWTFFPSFFYGTME | 1123 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 69708160 | 69715920 | - | Tan0002438.2 | Tan08g1771 | 761663 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g1771 | 1123 | SMART | 558neu5 | 80 | 202 | IPR006569 | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 833 | 853 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 453 | 477 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Tan08g1771 | 1123 | ProSiteProfiles | CID domain profile. | 77 | 205 | IPR006569 | - | |
Tan08g1771 | 1123 | FunFam | polyadenylation and cleavage factor homolog 4 | 74 | 202 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 730 | 808 | - | - | |
Tan08g1771 | 1123 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 58 | 1080 | IPR045154 | GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro) | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 207 | 227 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 794 | 808 | - | - | |
Tan08g1771 | 1123 | Pfam | CID domain | 87 | 195 | IPR006569 | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 833 | 894 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 743 | 783 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 413 | 441 | - | - | |
Tan08g1771 | 1123 | SUPERFAMILY | ENTH/VHS domain | 77 | 204 | IPR008942 | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 608 | 646 | - | - | |
Tan08g1771 | 1123 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 928 | 955 | IPR013087 | - | |
Tan08g1771 | 1123 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 930 | 950 | IPR013087 | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 617 | 646 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 413 | 477 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 861 | 894 | - | - | |
Tan08g1771 | 1123 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
Tan08g1771 | 1123 | CDD | CID_Pcf11 | 82 | 194 | IPR047415 | - | |
Tan08g1771 | 1123 | Gene3D | - | 72 | 202 | IPR008942 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g1770 | Tan-Chr8:69708160 | Tan08g1771 | Tan-Chr8:69708160 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g1771 | K14400 | - | csv:101223169 | 1779.22 |