Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1771 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAGCCAGGGAACCGGGTTTGAAGAAGCCCCGACTGGCCGACGAGGCTGAGCGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCGGGGACCAATATCGGGCAACCCAGATTTCGACCAAGTGAGAGAGATTCGGGTAGCAGTGATTCTGGTCGAGGGGGGTATCAGCCTCAACCGCCGCAGCATCAGGAGCTTGTCAGCCAGTACAGGACCGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCGAAAGCCATCTCTGCCACAGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCAGCACTTTATCTGTTGGACAGTATTGTGAAGAATATTGGAAGAGATTACATAAAATACTTTGCAGCAAAACTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACCCTTCTGTACATCCAAGTATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGGTTATCGAGAAAGAACTTAGCTTCATGCCCAGCGGTAGTTCTTCTTCTGGGACCATAACCCCGAAGCCAGATTTGCAGGCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTATTGCAACAACAAATGTAACTCCGGATGTTGCCCAAGCCAAAATTAGCACTGGACGTCCATGGGGGGGTGCTCCAATGAAAGTGCTTGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATGGCACAAGAGAAAAACATCACGGCTGCATATGCAGACTACGAATATGGTTCAGAACTTTCAAGGGCTCCAGGTATCGGAAGAAGAGTTGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCAGAGAAGATATCTGGCCAAAGGAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCTAACACTGGTGCACGTCTGCTGCCCATGCAAAATTTTTCAACCAGCAGCAGCAACCGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCATCTGCCATTACCAGTACCACTGGAAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGCCATTAAGCATACGGGATACTGGGGGAAGTGTTGATAGAGAAGCTTCTAGTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGCCAATATCTCTGGATGGGCTGAGAGGTGGGGTTCCTAGAAATAATTCAGCTCAGTTAGGAGGTTATGGTGCCACTCTTACTACATTGTCAGGTGCTAACTCTTCTGTGGATCAAATGGGAGGTCGACCTCCAATCACATCATCTAATATTGGAGCTTCAGGACATGGGTTTCTGAACAAAGGAGGTTCAGGGTTTATTGGCCATCAGAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAGCCACCCTTGCACCAACGTTCCCCTTCACCATTGTTAGTGGATCACGTTTCTCATCAAATGCCCGACCATAAAACTACTTCGTTTTCTAATCTTGACCCACGTAGAAGGCATATACAGGATGCTTCCCTTGGCCTGCATCCCAGCGTTCGGCCAGATAACCTTCAAAAACCACAGCATCAGGACCTTCAAGCTTCAGCTTCATCCATACCTGCTTCTCAATCCAGACACCAGTTCTCTTTATCTGAGTCACTAAAACCTGACGTCAGACAGTTAGAACTCTCTAGTCAGCATGCAGTATCAATTCCAGGCACTGATGTTGGACCTCCCTCATCAGCTGGGACAGTTCAAGATCGTTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTCTCCAACCATTCAATAACCAGTAGCATGCAGCAGAATATTAGCTTCCAAGATGTGGGAAACATGCAACTCCGTACAAACATCAAACCTCCTCTACCAAGCCGGTCTCCTCCTGCCCGTACTCAGTCTACATTCTCAGAGCCAAAGACTGTGGGAGAATCTTCATTACGTCCTCCATCTATTGAAAACCCATCAGCTCTTGTTAAGCTATCTCAAACTAAGGTAGAAGAGACACCGTTGCCATCTGATCCGCTTCCACCTTCATCTCCTATGAATAGTGCATCCACTGAAACTTCAAATGTGGTAAACGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATCTGCTTCAAAAGGAGAATTAACAAATAGCGTGACATCCCAGATGCCTTCACAGTCTGAAAATTTGAAGTCAGGTGATGCTGTGACGTGTTCTATACCAGTTCCTTCCATCCCTGCTACTTCTTCCGGTAAATCATCTATGAGACTTGAGTCACCTTCAAAAGCTGCTGCTAAGAGGTCCACTAGTCCACCTCCATCCGCCACAACTGAGATAAACAACCTCATAGGCTTTGAATTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATATCAATGTAAGATCTGTGGTCTGAGACTGAAACTTGAAGAACAGTTGGATACACACTTGCAGTGGCACACGTTAAGAACTGAGGCAGACAACTCAAATAGGACACCAAGATGGTATCCAAGTTCAGATGATTGGGTTTCTGGAAATGCTAGACTTTTACTTGGCGTTGCCACTTCTCTGGACAAATCCGACATGATGGAAGAAGATAACAAGCCAATGGTTCCTGCAGATGAAGATCAATTTGCGTGTGTTTTATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAATTGGGTAAGTGGATGTTCAAAGGAGCAACGTATATCACGATCCCATCAGCGAGTAGTGAGGTAGGAAGCACAAACGAACAAGTTGCGAGAGGAGGACCCATTGTGCATACAAATTGTATGACTGAAAGTTCAGTATATGACTTGGGACTGGCAACTGATATTAAGATGGTATTGTTCTTGGTTCTTTATACTTTTGCAGAACTTGATTTGGTTTCACTATCATCTATTGATCTCCCTTATGATTTTATGTGCTGTTCCTGGACTTTTTTCCCTTCTTTTTTTTATGGAACGATGGAGTGA 3372 45.4 MEMESSRRPFDRAREPGLKKPRLADEAERGGNINGRPFPQRPVVSGTNIGQPRFRPSERDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPALYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQVIEKELSFMPSGSSSSGTITPKPDLQAQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIATTNVTPDVAQAKISTGRPWGGAPMKVLDIQRPLRDAPNDMAQEKNITAAYADYEYGSELSRAPGIGRRVVDEGRDKPWSSAGSNLAEKISGQRNGFNIKLGYENYPAPKSANTGARLLPMQNFSTSSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGASAITSTTGKDQWTPEDSDNSGIENKPLSIRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQVQEPISLDGLRGGVPRNNSAQLGGYGATLTTLSGANSSVDQMGGRPPITSSNIGASGHGFLNKGGSGFIGHQRFPSRSVAFPSGQPPLHQRSPSPLLVDHVSHQMPDHKTTSFSNLDPRRRHIQDASLGLHPSVRPDNLQKPQHQDLQASASSIPASQSRHQFSLSESLKPDVRQLELSSQHAVSIPGTDVGPPSSAGTVQDRLPAEILGEPSTSSLLAAVMKSGIFSNHSITSSMQQNISFQDVGNMQLRTNIKPPLPSRSPPARTQSTFSEPKTVGESSLRPPSIENPSALVKLSQTKVEETPLPSDPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSVTSQMPSQSENLKSGDAVTCSIPVPSIPATSSGKSSMRLESPSKAAAKRSTSPPPSATTEINNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEADNSNRTPRWYPSSDDWVSGNARLLLGVATSLDKSDMMEEDNKPMVPADEDQFACVLCGELFEDFYSQELGKWMFKGATYITIPSASSEVGSTNEQVARGGPIVHTNCMTESSVYDLGLATDIKMVLFLVLYTFAELDLVSLSSIDLPYDFMCCSWTFFPSFFYGTME 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 69708160 69715920 - Tan0002438.2 Tan08g1771 761663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1771 1123 SMART 558neu5 80 202 IPR006569 -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 833 853 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 453 477 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 1 29 - -
Tan08g1771 1123 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Tan08g1771 1123 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 730 808 - -
Tan08g1771 1123 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 58 1080 IPR045154 GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(PANTHER)|GO:0006369(InterPro)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Tan08g1771 1123 MobiDBLite consensus disorder prediction 207 227 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 794 808 - -
Tan08g1771 1123 Pfam CID domain 87 195 IPR006569 -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 833 894 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 743 783 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 413 441 - -
Tan08g1771 1123 SUPERFAMILY ENTH/VHS domain 77 204 IPR008942 -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 608 646 - -
Tan08g1771 1123 ProSiteProfiles Zinc finger C2H2 type domain profile. 928 955 IPR013087 -
Tan08g1771 1123 ProSitePatterns Zinc finger C2H2 type domain signature. 930 950 IPR013087 -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 63 77 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 617 646 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 413 477 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 861 894 - -
Tan08g1771 1123 MobiDBLite consensus disorder prediction 1 77 - -
Tan08g1771 1123 CDD CID_Pcf11 82 194 IPR047415 -
Tan08g1771 1123 Gene3D - 72 202 IPR008942 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1770 Tan-Chr8:69708160 Tan08g1771 Tan-Chr8:69708160 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1771 K14400 - csv:101223169 1779.22