Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1782 ATGGAGTTCTGGGGTGCTGAGGTTAAAGCTGGAGAACCTCTCTTGGTGAGTCCTGGAGAGGAGAAGATATTGCATCTGTCTCAGGCATGCCTTGGAGAGTCCAAGAGCAAAGGAAGTGAACAGGTTTTTCTATATGTCAAGGTTGGCAATCAAAAGCTTGTTCTAGGGACATTATCCTCAGAGAAATTCCCACAAGTGTCTTTTGATCTGGTGTTTGACAAAGACTTTGAGCTATCTCATAATTGGAAAAATGGAAGTGTCTACTTTACGGGATATACATCTCTTCTCCCGGAAGAGGAGGAATCTTCTTATACTGATTCTGAAGAGGATCTTCCACTAGCTGCTGTTGACAATGGAAAGCCAGAGCCACAGCCTAAGAAAGATGCAAAGCCTGATACGTCTGGAACCAAGAAAAAAGTGCAGATTGTAGAACCAAACAAAGGTGGCTCAAATTCAATTATTGACAGTAAGAAGAATGAAGACAGTTCTGATGAAGATGATGATGAGGATGAAGACAGCTCGGATGATGAGAATGCAAATGGAGGTGAAGAAGATGACAGTGATGATGAAAATGAATTTTCTGGGGACGAGAGTGATGATGATGAAAATGAGGACTCGGATGATAGTTTGGAAGAGGATGAGCAGACACCAAAAAAGGCTGAAGCAAGCAAGAAGAGACCTTTAGAGTCTGCTAATAAAACACCTTCTTCTGATAAGAAGGCAAAACTCGTCACTCCTCAGAAAACTGATGGCAAGAAAGGTGTTCCTCATGTAGCTACTCCTCATCCTTCAAAGCAGGCCGGGAAAACGCCTGCTGCTAATGACCAAAACAAACCGCAGACTCCCAAATCAGCTGGCACGACATTCCCTTGCAAATCTTGCAAGAGGGCATTTGGCTCAGAAACTGCGTTGCAATCCCACACAAAAGCTAAGCACGGTGCTGAGAAGTGA 951 43.74 MEFWGAEVKAGEPLLVSPGEEKILHLSQACLGESKSKGSEQVFLYVKVGNQKLVLGTLSSEKFPQVSFDLVFDKDFELSHNWKNGSVYFTGYTSLLPEEEESSYTDSEEDLPLAAVDNGKPEPQPKKDAKPDTSGTKKKVQIVEPNKGGSNSIIDSKKNEDSSDEDDDEDEDSSDDENANGGEEDDSDDENEFSGDESDDDENEDSDDSLEEDEQTPKKAEASKKRPLESANKTPSSDKKAKLVTPQKTDGKKGVPHVATPHPSKQAGKTPAANDQNKPQTPKSAGTTFPCKSCKRAFGSETALQSHTKAKHGAEK 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 69793033 69796667 + Tan0000226.1 Tan08g1782 761674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1782 316 MobiDBLite consensus disorder prediction 99 292 - -
Tan08g1782 316 Gene3D Classic Zinc Finger 286 314 - -
Tan08g1782 316 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Tan08g1782 316 ProSitePatterns Zinc finger C2H2 type domain signature. 291 312 IPR013087 -
Tan08g1782 316 MobiDBLite consensus disorder prediction 161 211 - -
Tan08g1782 316 FunFam Histone deacetylase HDT1 1 98 - -
Tan08g1782 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 316 IPR013087 -
Tan08g1782 316 MobiDBLite consensus disorder prediction 267 288 - -
Tan08g1782 316 MobiDBLite consensus disorder prediction 212 236 - -
Tan08g1782 316 Gene3D Nucleoplasmin core domain 1 96 - -
Tan08g1782 316 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0161 Tan-Chr5:1273978 Tan08g1782 Tan-Chr8:69793033 1.20E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28203 PF17800 NPL 8.20E-14 CL0055 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1782 - - - 0.0