Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1788 ATGATGATGGTGAAGGAGAAGAAGAAGGAGAAGGTGGTGAAGATTTTCAGTTCTGCCATAGCTTTTTTTCTTCTCTCCATTACCCTCTTGGCTTCCCCTTCTCTCTGTTTAGATGATACTTCTGCTCTGACTCGCTTCCGTCTTCAAGCTGACTCTCATGGCGGCCTTCTCAGAAACTGGACTGGTTCTGATGCTTGTGCTTCTTCATGGCGTGGAGTTCAGTGCTCTGTCAATGGTCGCGTTGTCGCTCTTTCTCTTCCTTCTATGAACTTACGAGGGCCCATTGAGTCTCTAGCGCCGCTTGATCAACTCCGCCTTCTCGACCTCCATGACAACCGCTTGAATGGAACCATTTCGTCGATTGTGAACTGTACGAATCTCAAGTTACTGTATCTCTCTGGCAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCTCTCAGGCGACTCCTCCGGTTGGATTTGTCCGATAACAACATCCGCGGTGGAATTCCTGAGGATCTCTCGAAATTGTCTCGGCTTCTCACTCTTCGTTTGCAGAACAATGTCCTCTCCGGTACGGTTCCCGACCTCTCTGGTTCGCTTGTGAATCTCACTGAAGTTAATTTAACTAACAATGAACTATACGGCCGGTTACCGGACGGGATGGTGAAGAAATTCGGCGAGAAGAGTTTCGCCGGTAACGAAGGGGTTTGTGGATCGAGTCCGTTACCGATCTGTTCGGTTACTAGTTCACCGCCGGCGTCGGATTCCGGCAGAACGGTACCTTCAAATCCAAGCTCATTGCCGCAAAACCCTATTATCAGTCCGAACATCAAAGAATCTCGAAAAGGGCTCAGCCCAGGCGCGATTGTCGCGATTGTGATCGCAAATTGCGTTGCGTTGCTCGTCATTATCTCCTTCATCGTCGCGTATTACTGCGCTCGTGACCGGAGTTCGAGCTCCATGGCCGGAAGCGACAGCGGGAAGAGAAGGAAGAGTGGAAGTAGCTACGGAAGCGAGAAGAAGGTCTACGCCAATGGCGGCGGTGACAGCGACGGCACTAACGCTACAGATAGAAGCAAACTGGTGTTCTTCGATTGGAAGAAGCAATTCGAGCTTGAAGATTTGCTCCGAGCCTCGGCGGAGATGCTCGGAAAAGGAAGCTTAGGGACGGTGTACAGGGCGGTGCTGGACGACGGTTGTACGGTGGCGGTCAAGAGATTGAAGGATGCAAACCCATGTCCGAGGAAGGATTTTGAACAGTATATGGATGTGATTGGGAAGCTGAAACATCCAAATATTGTTAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCTAATGGAAGCTTGCATTCTCTTCTCCATGGTAATCGAGGTCCAGGAAGGATTCCATTGGATTGGACGACGAGAATCAGTTTGGTTTTGGGAGCTGCTCGTGGTTTAGCAAGAATCCATGGAGAATACAGTGCTTCAAAGATTCCCCATGGAAATATCAAGTCTTCTAATGTTCTTCTTGACAAGAATGGAGTTGCTTGCATTTCTGATTTTGGGTTGTCTCTTCTTCTCAACCCTGTCCATGCCATTGCTAGGTTGGGAGGGTACAAGGCCCCGGAACAAGACGAGACGAAACGACTCTCTCAAAAGGCAGATGTTTATAGTTTTGGAGTCTTGTTGCTTGAAGTCCTAACCGGACGTGCACCATCACTCTACCCGTCGCCTTCGCACCCGCGAAACGACGAGGAAGAGCAGGCGGTGGATCTCCCGAAATGGGTTCGATCCGTGGTGAAGGAAGAGTGGACGGCTGAGGTGTTTGATCCTGAGCTATTGAGGTACAAGAACATTGAGGAGGAGCTTGTGTCGATGCTTCATGTTGGGTTGGCTTGTGTTCTTCCTCAGCCCGAGAAGAGACCGACAATGGCCGAAGTGACGAAGATGATCGAAGATATCAGGGTCGAGCAGTCCCCGCTCGGAGAAGATTACGACGAATCGCGTAATTCGCTTTCACCTTCCCTTGCAACCACAGAAGATGGTATGGTGTAG 2052 49.61 MMMVKEKKKEKVVKIFSSAIAFFLLSITLLASPSLCLDDTSALTRFRLQADSHGGLLRNWTGSDACASSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRLLDLHDNRLNGTISSIVNCTNLKLLYLSGNDFSGEIPPEISSLRRLLRLDLSDNNIRGGIPEDLSKLSRLLTLRLQNNVLSGTVPDLSGSLVNLTEVNLTNNELYGRLPDGMVKKFGEKSFAGNEGVCGSSPLPICSVTSSPPASDSGRTVPSNPSSLPQNPIISPNIKESRKGLSPGAIVAIVIANCVALLVIISFIVAYYCARDRSSSSMAGSDSGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNIKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSHPRNDEEEQAVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVTKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGMV 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 69872201 69875016 + Tan0004293.1 Tan08g1788 761680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1788 683 MobiDBLite consensus disorder prediction 244 270 - -
Tan08g1788 683 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Tan08g1788 683 Gene3D Ribonuclease Inhibitor 148 246 IPR032675 -
Tan08g1788 683 SUPERFAMILY L domain-like 37 217 - -
Tan08g1788 683 Gene3D Ribonuclease Inhibitor 38 147 IPR032675 -
Tan08g1788 683 FunFam Leucine-rich repeat receptor-like protein kinase 37 191 - -
Tan08g1788 683 Pfam Protein kinase domain 377 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g1788 683 PANTHER OS05G0588300 PROTEIN 22 659 IPR050994 -
Tan08g1788 683 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 449 662 - -
Tan08g1788 683 MobiDBLite consensus disorder prediction 658 683 - -
Tan08g1788 683 FunFam pollen receptor-like kinase 1 344 448 - -
Tan08g1788 683 MobiDBLite consensus disorder prediction 313 327 - -
Tan08g1788 683 SUPERFAMILY Protein kinase-like (PK-like) 377 650 IPR011009 -
Tan08g1788 683 CDD STKc_IRAK 379 653 - -
Tan08g1788 683 MobiDBLite consensus disorder prediction 313 347 - -
Tan08g1788 683 ProSiteProfiles Protein kinase domain profile. 373 655 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g1788 683 Gene3D Phosphorylase Kinase; domain 1 346 448 - -
Tan08g1788 683 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515(InterPro)
Tan08g1788 683 Pfam Leucine Rich Repeat 151 172 IPR001611 GO:0005515(InterPro)
Tan08g1788 683 Gene3D Transferase(Phosphotransferase) domain 1 449 671 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0198 Tan-Chr8:1771376 Tan08g1788 Tan-Chr8:69872201 1.20E-91 dispersed
Tan08g1788 Tan-Chr8:69872201 Tan09g1335 Tan-Chr9:65636570 5.90E-86 dispersed
Tan08g1788 Tan-Chr8:69872201 Tan04g0825 Tan-Chr4:7019190 7.40E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67961 PF00069 Pkinase 6.00E-34 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1788 - - - 0.0