Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan08g1805 | ATGGCGGTTTCTCAGACGACGGTTCATGCCTCTCCGGCTTCCCTTTACGTAGGCGACCTTCATCCTGATATCACTGATGGCCAGCTCTTTGATGCTTTCTCTGGCTTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCTACTGGACGATCTCTCGCTTATGGCTACGTCAATTTCATTTCCCCTCAAGACGCAATCAATGCCATGGAGGTGATGAATCACAGTTTGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCTCGTCGTGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGATTCTGCAAATGCTGCCATAGAGTCACTGAATGGTTTCACCATTGGGGATAAGCAGATATATGTTGGAAAGTTTGTGAGGAAAAGTGATCGAATTTTGGCCAATCGTGATGTTAAATACACAAATCTCTATGTGAAAAATCTTGACCCAGAGGTTGGGGAAGAGCTTTTGCAAGAAAAATTCTCTGAGTTTGGAAAAATTTCCAGCTTGGTTATTTCAAGGGATGAGAATGGGATGTCAAGGGGTTTTGGCTTTATAAATTTTGACAATTCAGATGATGCCAAACGGGCATTGGAAGCACTTAATGGACTAGAACTTGGTTCTAAGGCTATCTACATCGCGAGGGCACAAAAGAAGTCTGAACGTGAGCAAATATTACGTCGACATTACGAAGAGAAATGTAAGGAGCAAATGATAAAATGCAAGGGCTCAAATGTGTATGTGAAGAACATTGATGATGATGTTACTGATGAAGAACTAAGAGAACGTTTTAGTCAGTTTGGCACCATCACTTCATCAAAACTCATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTTTGCTTCTCTAATCCTGACGAAGCTAAAAGAGCTGTGAACACGTTGCAAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCTATAGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTGCACAACGGTTGGCAGGGATACCGGGACCGTCAACTACAATTTTTCCTGGTGGATACTCACCTTATTACTACACAGCACCAGGTGTTGTTCCACAAGTACCATCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTTTGCATCTCCTGCAAGACCTGCCTTTCAACCTTCACCAGTACCTATTATTCCGAATGCGTCTAGGCTACCCAGGCAAAATAGAGGCAAAATGAATGGACAAATGCTTTCTCATCAAAATGGTGTCCAATCTGTCTCTTATATGCAAAATTCACAAGATAGCAATCAATCAGTAGTTACTGCAAAATCGTCTGGCAATCAGCAGTGGACCGGACAGGTCAAGTACGTACCAAATGCTCGACCGTGTGAAACAAACAAACCCTCTGGAGCCTCACCGGCTGCTTTGAACTCAGTTGGAGATATCTCTCAGGGATCACAAATACTGAGCAGCATGCTTGCTGCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGGGAGCATCTCTACCCACTAGTCCAAAAACACAAGCCGGAGCTCGCTGCGAAAATTACCGGGATGCTTCTGGAGATGGACAACTCGGAATTGCTGCTCCTGTTAGAGTCACCTGAATCTCTGACTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGGTCTCCAAGACTAAGCTGTCCAACCAAGACACGCTCGGTTTCTTATCAGCTGAGCTTGCAGTCAGCTGA | 1914 | 44.2 | MAVSQTTVHASPASLYVGDLHPDITDGQLFDAFSGFKSLASVRICRDSSTGRSLAYGYVNFISPQDAINAMEVMNHSLLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIESLNGFTIGDKQIYVGKFVRKSDRILANRDVKYTNLYVKNLDPEVGEELLQEKFSEFGKISSLVISRDENGMSRGFGFINFDNSDDAKRALEALNGLELGSKAIYIARAQKKSEREQILRRHYEEKCKEQMIKCKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYSPYYYTAPGVVPQVPSRPGLMFQPLGMRPGWRANTFASPARPAFQPSPVPIIPNASRLPRQNRGKMNGQMLSHQNGVQSVSYMQNSQDSNQSVVTAKSSGNQQWTGQVKYVPNARPCETNKPSGASPAALNSVGDISQGSQILSSMLAASPPDQQKQILGEHLYPLVQKHKPELAAKITGMLLEMDNSELLLLLESPESLTAKVEEAVQVLKVSKTKLSNQDTLGFLSAELAVS | 637 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 70006623 | 70011328 | - | Tan0013374.1 | Tan08g1805 | 761697 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan08g1805 | 637 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 295 | 372 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | FunFam | Polyadenylate-binding protein | 98 | 182 | - | - | |
| Tan08g1805 | 637 | Pfam | Poly-adenylate binding protein, unique domain | 549 | 614 | IPR002004 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | SMART | poly_2 | 554 | 617 | IPR002004 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | Gene3D | - | 539 | 619 | - | - | |
| Tan08g1805 | 637 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 13 | 91 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | SMART | rrm2_1 | 193 | 265 | IPR003954 | GO:0003676(InterPro) | |
| Tan08g1805 | 637 | SMART | rrm2_1 | 102 | 174 | IPR003954 | GO:0003676(InterPro) | |
| Tan08g1805 | 637 | SMART | rrm2_1 | 296 | 368 | IPR003954 | GO:0003676(InterPro) | |
| Tan08g1805 | 637 | SMART | rrm1_1 | 14 | 87 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | SMART | rrm1_1 | 193 | 265 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | SMART | rrm1_1 | 102 | 174 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | SMART | rrm1_1 | 296 | 368 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | SUPERFAMILY | PABC (PABP) domain | 506 | 625 | IPR036053 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 192 | 269 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | Gene3D | - | 178 | 279 | IPR012677 | - | |
| Tan08g1805 | 637 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 13 | 615 | IPR006515 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | PANTHER | RNA BINDING PROTEIN | 192 | 449 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Tan08g1805 | 637 | FunFam | Polyadenylate-binding protein | 540 | 626 | - | - | |
| Tan08g1805 | 637 | Gene3D | - | 280 | 381 | IPR012677 | - | |
| Tan08g1805 | 637 | SUPERFAMILY | RNA-binding domain, RBD | 294 | 386 | IPR035979 | GO:0003676(InterPro) | |
| Tan08g1805 | 637 | SUPERFAMILY | RNA-binding domain, RBD | 185 | 279 | IPR035979 | GO:0003676(InterPro) | |
| Tan08g1805 | 637 | FunFam | Polyadenylate-binding protein | 278 | 386 | - | - | |
| Tan08g1805 | 637 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 542 | 619 | IPR002004 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | FunFam | Polyadenylate-binding protein | 5 | 97 | - | - | |
| Tan08g1805 | 637 | FunFam | Polyadenylate-binding protein | 183 | 277 | - | - | |
| Tan08g1805 | 637 | Pfam | RNA recognition motif | 194 | 262 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | Pfam | RNA recognition motif | 103 | 171 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | Pfam | RNA recognition motif | 297 | 365 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | Pfam | RNA recognition motif | 15 | 85 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | CDD | RRM4_I_PABPs | 294 | 372 | - | - | |
| Tan08g1805 | 637 | SUPERFAMILY | RNA-binding domain, RBD | 13 | 180 | IPR035979 | GO:0003676(InterPro) | |
| Tan08g1805 | 637 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 101 | 178 | IPR000504 | GO:0003723(InterPro) | |
| Tan08g1805 | 637 | Gene3D | - | 102 | 174 | IPR012677 | - | |
| Tan08g1805 | 637 | Gene3D | - | 3 | 101 | IPR012677 | - | |
| Tan08g1805 | 637 | Coils | Coil | 264 | 284 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan04g2367 | Tan-Chr4:82214798 | Tan08g1805 | Tan-Chr8:70006623 | 7.20E-13 | dispersed | |
| Tan08g0005 | Tan-Chr8:252928 | Tan08g1805 | Tan-Chr8:70006623 | 3.40E-17 | dispersed | |
| Tan08g1805 | Tan-Chr8:70006623 | Tan11g1085 | Tan-Chr11:8607392 | 1.80E-124 | dispersed | |
| Tan08g1805 | Tan-Chr8:70006623 | Tan08g1806 | Tan-Chr8:70006623 | 6.00E-290 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan08g1805 | K13126 | - | csv:101203793 | 1137.09 |