Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1806 ATGGCGGTTTCTCAGACGACGGTTCATGCCTCTCCGGCTTCCCTTTACGTAGGCGACCTTCATCCTGATATCACTGATGGCCAGCTCTTTGATGCTTTCTCTGGCTTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCTCTACTGGACGATCTCTCGCTTATGGCTACGTCAATTTCATTTCCCCTCAAGACGCAATCAATGCCATGGAGGTGATGAATCACAGTTTGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCTCGTCGTGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGATTCTGCAAATGCTGCCATAGAGTCACTGAATGGTTTCACCATTGGGGATAAGCAGATATATGTTGGAAAGTTTGTGAGGAAAAGTGATCGAATTTTGGCCAATCGTGATGTTAAATACACAAATCTCTATGTGAAAAATCTTGACCCAGAGGTTGGGGAAGAGCTTTTGCAAGAAAAATTCTCTGAGTTTGGAAAAATTTCCAGCTTGGTTATTTCAAGGGATGAGAATGGGATGTCAAGGGGTTTTGGCTTTATAAATTTTGACAATTCAGATGATGCCAAACGGGCATTGGAAGCACTTAATGGACTAGAACTTGGTTCTAAGGCTATCTACATCGCGAGGGCACAAAAGAAGTCTGAACGTGAGCAAATATTACGTCGACATTACGAAGAGAAATGTAAGGAGCAAATGATAAAATGCAAGGGCTCAAATGTGTATGTGAAGAACATTGATGATGATGTTACTGATGAAGAACTAAGAGAACGTTTTAGTCAGTTTGGCACCATCACTTCATCAAAACTCATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTTTGCTTCTCTAATCCTGACGAAGCTAAAAGAGCTGTGAACACGTTGCAAGGATGTATGTTTCACGGGAAGCCACTCTATTTGGCTATAGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGCTTCAGTTTGCACAACGGTTGGCAGGGATACCGGGACCGTCAACTACAATTTTTCCTGGTGGATACTCACCTTATTACTACACAGCACCAGGTGTTGTTCCACAAGTACCATCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTTTGCATCTCCTGCAAGACCTGCCTTTCAACCTTCACCAGTACCTATTATTCCGAATGCGTCTAGGCTACCCAGGCAAAATAGAGGCAAAATGAATGGACAAATGCTTTCTCATCAAAATGGTGTCCAATCTGTCTCTTATATGCAAAATTCACAAGATAGCAATCAATCAGTAGTTACTGCAAAATCGTCTGGCAATCAGCAGGTAAACTGTCCTAGTCAGTCTATCTACGAAGTATTCACTTACATTCTTATGCCTCGTACTTGTCCCATTTATCTAATTTTCATGTGGAATATACTTTCTCAGACTGTTTTTTTTGTGGTAATTTATTTCCAAGTGTCTTTGGAGGGTGTTTTGGACTGGAAGGTGCTGATGGTAAGAATCTTTGTGGGTCTCCTATCCATTTTCCATATATAG 1731 41.65 MAVSQTTVHASPASLYVGDLHPDITDGQLFDAFSGFKSLASVRICRDSSTGRSLAYGYVNFISPQDAINAMEVMNHSLLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIESLNGFTIGDKQIYVGKFVRKSDRILANRDVKYTNLYVKNLDPEVGEELLQEKFSEFGKISSLVISRDENGMSRGFGFINFDNSDDAKRALEALNGLELGSKAIYIARAQKKSEREQILRRHYEEKCKEQMIKCKGSNVYVKNIDDDVTDEELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYSPYYYTAPGVVPQVPSRPGLMFQPLGMRPGWRANTFASPARPAFQPSPVPIIPNASRLPRQNRGKMNGQMLSHQNGVQSVSYMQNSQDSNQSVVTAKSSGNQQVNCPSQSIYEVFTYILMPRTCPIYLIFMWNILSQTVFFVVIYFQVSLEGVLDWKVLMVRIFVGLLSIFHI 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 70006623 70011328 - Tan0013374.2 Tan08g1806 761698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1806 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 FunFam Polyadenylate-binding protein 98 182 - -
Tan08g1806 576 SUPERFAMILY RNA-binding domain, RBD 14 273 IPR035979 GO:0003676(InterPro)
Tan08g1806 576 Gene3D - 283 381 IPR012677 -
Tan08g1806 576 Gene3D - 187 282 IPR012677 -
Tan08g1806 576 FunFam Polyadenylate-binding protein 5 97 - -
Tan08g1806 576 Pfam RNA recognition motif 103 171 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 Pfam RNA recognition motif 297 365 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 Pfam RNA recognition motif 194 262 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 Pfam RNA recognition motif 15 85 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 CDD RRM4_I_PABPs 294 372 - -
Tan08g1806 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 SMART rrm2_1 193 265 IPR003954 GO:0003676(InterPro)
Tan08g1806 576 SMART rrm2_1 102 174 IPR003954 GO:0003676(InterPro)
Tan08g1806 576 SMART rrm2_1 296 368 IPR003954 GO:0003676(InterPro)
Tan08g1806 576 SMART rrm1_1 14 87 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 SMART rrm1_1 193 265 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 SMART rrm1_1 102 174 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 SMART rrm1_1 296 368 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 SUPERFAMILY RNA-binding domain, RBD 293 386 IPR035979 GO:0003676(InterPro)
Tan08g1806 576 SUPERFAMILY RNA-binding domain, RBD 98 182 IPR035979 GO:0003676(InterPro)
Tan08g1806 576 Gene3D - 102 186 IPR012677 -
Tan08g1806 576 FunFam Polyadenylate-binding protein 183 277 - -
Tan08g1806 576 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723(InterPro)
Tan08g1806 576 Coils Coil 264 284 - -
Tan08g1806 576 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 13 501 IPR006515 GO:0003723(InterPro)
Tan08g1806 576 Gene3D - 3 101 IPR012677 -
Tan08g1806 576 PANTHER RNA BINDING PROTEIN 192 449 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Tan08g1806 576 FunFam Polyadenylate-binding protein 278 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1806 Tan-Chr8:70006623 Tan11g1085 Tan-Chr11:8607392 7.40E-106 dispersed
Tan08g1805 Tan-Chr8:70006623 Tan08g1806 Tan-Chr8:70006623 6.00E-290 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1806 K13126 - csv:101203793 939.873