Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1809 ATGGCAGATTCAGCAGCACCAGAGTCTGCCACCAGCACTGCGTCGTCCGCCGCCGACCCCACCGCCACAGTCACCGCCGGCTCGAGTTCTGCCCCACCCGTAGCTACACCGGTGCCCAAACGTGCTTGGGGCGATGAAGAAGACGATGATGTGGATGATGCTGGAGATTCATCCTCTGCGCCTTCCGAGTTCCTGGAATCCCTTAAAATCAAGGAGGAAACATATCTAGAAGAACCTGAAGACTCTAACATCACAGCGGTGACAACCGATGGTACTCCATATACATCAGCTAGAACTTTTCAGGATCTGAATCTGTCCCCAGAGTTGTTGAAGGGTTTGTATGTTGAGATGCAATTCCAAAAGCCAAGTAAAATTCAAGCTATAAGTTTGCCTATGATCTTGACTCCTCCTTACAAAGACTTGATTGCTCAAGCACACAATGGCTCTGGCAAGACTACTTGTTTTGTACTTGGGATGTTGAGTCGCGTTGATCCGAACTTGAAGGCTCCTCAGGCGCTTTGCATATGTCATACAAGGGAGTTAGCCATGCAGAATATTGAGGTTCTTAATAAAATGGGAAAATACACTGGGATAACTTCTGAGTGTGCAGTTCCAGCAAGCAATGCTAACTATGTACCTATGTCAAAGCGACCACCAATAACTGCACAAGTTGTGATTGGGACTCCTGGCACAATAAAGAAATGGATGTCATCGAGGAAGCTGGGAGTAAGTTGCATAAAGATTCTAGTTTTTGACGAGGCTGATCATATGCTTGCTGAGGATGGCTTTAAGGATGATTCATTGAGAATCATGAGGGACATTGAGAGAAGTAGCCCTCATTGCCAGGTGCTTCTGTTCTCTGCTACATTCAATGAGACTGTTAAAAACTTTGTCTCTAGGGTTGTTAAGGACTACAACCAACTTTTTGTTAAGAAAGAAGAACTATCTTTGGAGGGTGTGAAGCAATACAAGGTGATATGTCCAGATGAGTTATCAAAAATTCGTGTCATAAAAGATAGAATTTTGGAACTAGGAGAGAATGTGGGTCAGACGATTATATTTGTGAGGACAAGAAACAGTGCTAGCATGTTACATAAGGCACTTGTTGATTTTGGTTATGATGTGACTACCATTCAAGGGGCAATGACAATTGAAGATAGAGACAAAATCATAAAAGAGTTCAAGGATGGTTTGACCAAAGTTCTTATTTCGACCGACCTTCTAGCTCGAGGCTTCGACCAACAACAGGTCAATTTGGTTATCAATTATGATCTTCCTTTGAAACGCGAATCTTCAGAAGTGCACAAATTCAGATCTTCACAATCTGAGCCTGACTATGAGGTGTACCTCCATAGAATTGGTCGGGCAGGTCGTTTTGGGCGCAAGGGAGCTGTGTTTAACTTGCTCTGTGAAGACATGGAATACATGCAAATGGCTAAAATTCAGAACCACTTTGGCTCTGAAATAACAGAGGTTCGAGACTCTGATGAGGACTTTCAAGCAGCCTTAAAATCTGCTGGTTTGCTCTGA 1530 43.79 MADSAAPESATSTASSAADPTATVTAGSSSAPPVATPVPKRAWGDEEDDDVDDAGDSSSAPSEFLESLKIKEETYLEEPEDSNITAVTTDGTPYTSARTFQDLNLSPELLKGLYVEMQFQKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICHTRELAMQNIEVLNKMGKYTGITSECAVPASNANYVPMSKRPPITAQVVIGTPGTIKKWMSSRKLGVSCIKILVFDEADHMLAEDGFKDDSLRIMRDIERSSPHCQVLLFSATFNETVKNFVSRVVKDYNQLFVKKEELSLEGVKQYKVICPDELSKIRVIKDRILELGENVGQTIIFVRTRNSASMLHKALVDFGYDVTTIQGAMTIEDRDKIIKEFKDGLTKVLISTDLLARGFDQQQVNLVINYDLPLKRESSEVHKFRSSQSEPDYEVYLHRIGRAGRFGRKGAVFNLLCEDMEYMQMAKIQNHFGSEITEVRDSDEDFQAALKSAGLL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 70025281 70028586 + Tan0003072.1 Tan08g1809 761701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1809 509 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 500 IPR001650 -
Tan08g1809 509 SMART helicmild6 362 460 IPR001650 -
Tan08g1809 509 CDD DEADc_DDX19_DDX25 105 308 - -
Tan08g1809 509 CDD SF2_C_DEAD 320 469 - -
Tan08g1809 509 SMART ultradead3 118 323 IPR014001 -
Tan08g1809 509 Pfam Helicase conserved C-terminal domain 334 460 IPR001650 -
Tan08g1809 509 MobiDBLite consensus disorder prediction 1 32 - -
Tan08g1809 509 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 485 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0005634(PANTHER)|GO:0010494(PANTHER)|GO:0016973(PANTHER)
Tan08g1809 509 Gene3D - 78 314 IPR027417 -
Tan08g1809 509 Gene3D - 315 500 IPR027417 -
Tan08g1809 509 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 308 IPR014001 -
Tan08g1809 509 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 98 127 IPR014014 GO:0003724(InterPro)
Tan08g1809 509 MobiDBLite consensus disorder prediction 1 67 - -
Tan08g1809 509 Pfam DEAD/DEAH box helicase 124 296 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Tan08g1809 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 479 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1809 Tan-Chr8:70025281 Tan10g0256 Tan-Chr10:2281674 1.10E-47 dispersed
Tan08g1809 Tan-Chr8:70025281 Tan06g0154 Tan-Chr6:1445857 3.20E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1809 K18655 - csv:101222195 798.89