Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1824 ATGAGGATCAAAACCAACTTCTTCTTTTGGCTCTATACTTTTGTCATTGTAGCCCTTTCCATCATCATTGCCTTCCGCTCGTTCCCACGTTCCTTGATCGCTATCGTTGCCGACGTCGGTCCTCAAGACGGTGCATTTGAGCTTGGCATTTTCAGCAGTCTAGTGAAAGAGAGTGGCTTGGATGTTCTCTTGTCTCTTGTAACTCAAATTGTGTCCAAACACCATCTTGGATGGAAGCATAGAAGAAATTGTGATGAGAAGAAATGGAACTCTGAGTTGATATCTATGTACAATGTTTCACTCACTTTGACAGTTGATTTGAAGGGATGTGCAAATTTTAGTAGTGTGCAAAAGGCAGTGGATGCTGTTCCTGATTATGGCTCTTCATGGACTCTTATCCTAATTGACTCTGGAATTTACAGGGAGAAGGTGGTGATAGAAGCCAACAAGACAAACTTGATAATTCAAGGTCAAGGTTATCTCAACACTGCAATAGAATGGAATGACACTGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTCACCATTTTTGCTTCAAATTTCACTGCTTTCAACATCAGCTTTAAAAACACAGCTCCTGAGCCAACTCCAGGGATTGTTGGAGGGCAAGCAGTGGCACTTCGAATTGCTGGAGATGAAGCTGCTTTCTATGGATGTGGATTTTATGGAGCTCAAGACACACTCTATGATGACAAAGGAAGACATTATTTCAAACAATGTTTCATTCAAGGATCCATTGATTTCATCTTTGGCAACGCGCGATCGCTCTATGATGGCTGTAGCATCAAGTCAATAGCAAAGGAAGTGTGGGGTGGTGGAGTGAGTGGAGCCATCACAGCTCAAGGAAGGCAAACAAGCAGGGAGGAAACTGGTTTTGCTTTCATCAACTGCACCATCCATGGCTCTGGGAAGGTGTGGCTCGGCCGTGCCTGGGGCGCCTCCGCCACCGTCATCTTCTCCAACACATACATGACCGATGTCGTCGCAGCCGACGGATGGAATGACTGGAGAGACCCTTCAAGAGACCAGAGTGTGTTCTTTGGGGAATATGAATGCTTTGGATATGGAGCAAATTACAGTTTGAGAGTGCCATATGCAAAGCAGCTGAATCAAGTGGAAGCTCAACCTTACTTGGATGTTTCTTATAGACCCTTTTGGAGGGGTTTTAGGAGTTCATTTTGTGGGTGTTGGAAAAGGAACTTTGGAGATTGGAGGGCCTTTTTCAGCCTCAAAACTTTATCTTCTTTCCCTCATCTTCATAGCCTTGAGGTTGTTCAATGTAGACTTCTTCCTCAAGGACCCAGATTAAGAAAGCGATTTAACATCCATTTGGTGAATTCTCCAATTGTTTTGAGTCGCTAA 1389 44.28 MRIKTNFFFWLYTFVIVALSIIIAFRSFPRSLIAIVADVGPQDGAFELGIFSSLVKESGLDVLLSLVTQIVSKHHLGWKHRRNCDEKKWNSELISMYNVSLTLTVDLKGCANFSSVQKAVDAVPDYGSSWTLILIDSGIYREKVVIEANKTNLIIQGQGYLNTAIEWNDTANSTGGTTYSSSVTIFASNFTAFNISFKNTAPEPTPGIVGGQAVALRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKQCFIQGSIDFIFGNARSLYDGCSIKSIAKEVWGGGVSGAITAQGRQTSREETGFAFINCTIHGSGKVWLGRAWGASATVIFSNTYMTDVVAADGWNDWRDPSRDQSVFFGEYECFGYGANYSLRVPYAKQLNQVEAQPYLDVSYRPFWRGFRSSFCGCWKRNFGDWRAFFSLKTLSSFPHLHSLEVVQCRLLPQGPRLRKRFNIHLVNSPIVLSR 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 70226162 70232466 + Tan0013660.1 Tan08g1824 761716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1824 462 Gene3D - 96 394 IPR012334 -
Tan08g1824 462 Pfam Pectinesterase 104 384 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan08g1824 462 FunFam Pectinesterase 97 394 - -
Tan08g1824 462 SUPERFAMILY Pectin lyase-like 98 391 IPR011050 -
Tan08g1824 462 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 81 391 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Tan08g1824 462 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1010 Tan-Chr1:9767410 Tan08g1824 Tan-Chr8:70226162 4.60E-99 dispersed
Tan08g1824 Tan-Chr8:70226162 Tan09g1204 Tan-Chr9:64334042 1.00E-73 dispersed
Tan08g1824 Tan-Chr8:70226162 Tan02g1980 Tan-Chr2:88702693 3.90E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1824 - - - 0.0