Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1837 ATGGACAGAGAGTGGGGGTCGAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAAAATGAAGCTATCGATCGGAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTACTTCATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCACACGCAGGGGAAGCGGCACCAGACTAATTTGGCCAAGAGAGCAGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGAAGGCCTGGTTATCGAGTAACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTACTTTTCCAGATTGAGTATCCAGAAATTGAAGACCTAGCAAAGCCAAGACATCGGTTTATGTCCTCTTATGAGCAGCGGGTGCAACCGTTTGATAAAAGATACCAATATCTACTGTTTGCAGCTGAACCGTATGAGATAATTGCTTTCAAGGTTCCAAGCACAGAGATTGACAAATCCACACCAAAATTCTTCTCACACTGGGATCCGGACTCAAAAATGTTCACGTTGCAGTTGTATTTCAAATCCAAGCCACTAGAGGCAAACAAGCCACAAACTGTGCCTGCAGCGAATGGAACGGTGCCATCTGGTGCACCACCGAGGCCACTGCCGCCACCACCACCACCTCCACCACAGCAAGGGGTACCACCAAGAGTTCCTCCTCCTCCCATGCCTGGATCCTTGCCGCCTCCCCCTTCTGTAATGGCAAATGGTCCTCCTAGGCCAATGCCTCCTGGTGGGGCTCCGCCCATCCCTCCACCGCCTCCGGTTGGAAATAATACAATGGCGAATTTCACTCCTGGTACTCAGGTGAATAGACCTCCCATGCCACCTCCCCCACAGGGCTTCCCCGGCCAGGGTGTCCGTCAGCCGCCACCGCCACCACCCAATATGGGATAG 1008 52.28 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPLEANKPQTVPAANGTVPSGAPPRPLPPPPPPPPQQGVPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQVNRPPMPPPPQGFPGQGVRQPPPPPPNMG 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 70477528 70480567 - Tan0018839.1 Tan08g1837 761729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1837 335 SMART CactinC_cactus_3 89 214 - -
Tan08g1837 335 MobiDBLite consensus disorder prediction 1 21 - -
Tan08g1837 335 FunFam Splicing factor 3a subunit 2 94 218 - -
Tan08g1837 335 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 332 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Tan08g1837 335 MobiDBLite consensus disorder prediction 231 296 - -
Tan08g1837 335 Gene3D - 93 218 - -
Tan08g1837 335 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Tan08g1837 335 MobiDBLite consensus disorder prediction 307 335 - -
Tan08g1837 335 Gene3D Classic Zinc Finger 46 89 - -
Tan08g1837 335 MobiDBLite consensus disorder prediction 219 335 - -
Tan08g1837 335 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Tan08g1837 335 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Tan08g1837 335 Pfam Zinc-finger of C2H2 type 52 76 IPR013087 -
Tan08g1837 335 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1837 K12826 - csv:101202831 474.937