Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1843 ATGCCGTTTCAGAGGATAGTTATCGCCGTCGGCCGGCCGGAGGAGGCGACCCACCCCGCCGCCCTGAAAGCCGCCTTGGCCGAGTTCATTTCCACTCTTATTTTCGTCTTCGCCGGCCAAGGTTCCGGTCTGGCCTTCGCTAAGATCACTCATAATTCTCCCACCAGCCCTGTTGGCCTCATCACAGCCTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGGCGCCAACATCTCCGGCGGCCACCTCAACCCCGCCGTCACTTTTGGCGCCTTGGTCGGCGGTAACATCACCCTCCTCCGCGGGCTTCTCTACTGGATCGCTCAGCTCTTCGGCGCCGTCGTCGCTAACTTATTGCTTAAGTTCGTCATCTCTGACGTAGCAATCACAGGATTCTCGTTATCAGGCGGCGTAGGAGTATGGGAAGGCTTCGTATTAGAGATCGTAATGACATTTGGATTAGTGTATACAGTTTACGCCACCGCCATCGATCCCAAGAAGGGAGAATTGGGAGTTATAGCACCCATCGCCATTGGATTCATCGTCGCCGCCAATATTCTCGTCGGCGGCCCTTTCACCGGCGCCTCCATGAACCCCGCCGTCGCCTTCGGTCCTGCCGTCGTCGCTTGGTCCTGGGCCAACCACTGGATCTTCTGGGCCGGCCCACTCATCGGTGCCGCCTTGGCTGGTATCATCTACGAGCTCTTCTTCATCGGCTTCACCCACGAGCCCCTTCCTGCTACTGAATACTAA 762 57.61 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFAKITHNSPTSPVGLITASLAHGFALFVGVSTGANISGGHLNPAVTFGALVGGNITLLRGLLYWIAQLFGAVVANLLLKFVISDVAITGFSLSGGVGVWEGFVLEIVMTFGLVYTVYATAIDPKKGELGVIAPIAIGFIVAANILVGGPFTGASMNPAVAFGPAVVAWSWANHWIFWAGPLIGAALAGIIYELFFIGFTHEPLPATEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 70567235 70569933 + Tan0007094.1 Tan08g1843 761735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1843 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 Gene3D Glycerol uptake facilitator protein. 6 247 IPR023271 -
Tan08g1843 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Tan08g1843 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Tan08g1843 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1843 253 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Tan08g1843 253 FunFam Probable aquaporin TIP1-1 6 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2117 Tan-Chr5:71839586 Tan08g1843 Tan-Chr8:70567235 3.60E-74 dispersed
Tan06g0273 Tan-Chr6:2170720 Tan08g1843 Tan-Chr8:70567235 1.00E-72 dispersed
Tan07g1804 Tan-Chr7:69590827 Tan08g1843 Tan-Chr8:70567235 9.50E-74 dispersed
Tan08g1843 Tan-Chr8:70567235 Tan11g0768 Tan-Chr11:6481157 8.10E-89 dispersed
Tan04g2102 Tan-Chr4:75968736 Tan08g1843 Tan-Chr8:70567235 6.30E-23 transposed
Tan03g1125 Tan-Chr3:67392328 Tan08g1843 Tan-Chr8:70567235 1.70E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1843 K09873 - csv:101222386 424.861