Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1884 ATGGCGAACGAAGACATCGAAGTCGGAGCTCCGGAGTCGGCGTCGAGGAAGGATTATTTGGACCCGGTGCCGGCGCCGATAATCGACAGGGAGGAGTTGGCAAAATGGTCGTTTTACAGAGCGATAATTGCGGAGTTTGTGGCGACTCTGTTGTTTCTGTACGTCACCGTTTTGACGGTGATCGGAAATAAAAGCCAGACGGATCCGCTCATTAGCGGGAATGTGTGCGCCGGAGTTGGCACCCTCGGAGTCGCGTGGGCCTTCGGCGGTATGATCTTCGTCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCGGCAGTGTCATTTGGAATGTTTTTGGGGAGAAAGATATCGCTTGTTCGCGCCTTGCTTTACATTATAGCTCAGTGCTTAGGGGCACTCTGTGGCTGCGCCTTAGTGAAGACACTGCAAAGAGATCGCTACAACCATTACGGCGGCGGCGCGAACCAGCTCGTTGATGGCTACAGCCAAGGCACCGGTCTCGCTGTCGAGATCGTTGGCACCTTCGTCCTTCTCTACACCGTCTTCTCCGCCACCGATCCCAAACGCAATGCTCGAGATTCCTACGTTCCCGTTCTCGCTCCGCTCCCTATCGGCTTTGCTGTCTTCATGGTTCACCTCGCTACAATCCCGGTTACTGGCACTGGCATCAACCCGGCTCGAAGCTTCGGCGCCGCGGTCATCATCAACGATAAAAAAGTTTGGAAAGATCATTGGATTTTTTGGGTAGGGCCGTTAATTGGATCAACCATTGCTACAATGTATTACCAACATGTTCTTCGAGCCTCCGCTGTGAGAGCCATCAGATCTTTCAGAAGCTCACCACCCACTCGCGACTAA 873 53.38 MANEDIEVGAPESASRKDYLDPVPAPIIDREELAKWSFYRAIIAEFVATLLFLYVTVLTVIGNKSQTDPLISGNVCAGVGTLGVAWAFGGMIFVLVYCTAGISGGHINPAVSFGMFLGRKISLVRALLYIIAQCLGALCGCALVKTLQRDRYNHYGGGANQLVDGYSQGTGLAVEIVGTFVLLYTVFSATDPKRNARDSYVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIINDKKVWKDHWIFWVGPLIGSTIATMYYQHVLRASAVRAIRSFRSSPPTRD 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71178168 71183210 + Tan0014338.1 Tan08g1884 761776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1884 290 CDD MIP 40 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Tan08g1884 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Tan08g1884 290 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Tan08g1884 290 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Tan08g1884 290 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g1884 290 FunFam Probable aquaporin PIP1-2 25 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1534 Tan-Chr8:63537060 Tan08g1884 Tan-Chr8:71178168 2.40E-28 dispersed
Tan08g1884 Tan-Chr8:71178168 Tan11g0853 Tan-Chr11:7002074 4.70E-117 dispersed
Tan03g1055 Tan-Chr3:66822569 Tan08g1884 Tan-Chr8:71178168 2.40E-110 wgd
Tan04g0596 Tan-Chr4:5061882 Tan08g1884 Tan-Chr8:71178168 4.20E-118 wgd
Tan05g0256 Tan-Chr5:1952043 Tan08g1884 Tan-Chr8:71178168 2.30E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1884 K09872 - csv:101214142 505.753