Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1892 ATGTCAAGTAATCCTTTTTCTCTTCTCTCTTCCACTACCACTGGCTTTGCTCCACAACAAGATCATGCTAACCCTAATCCTAACCCTAAACCGAAACCCTCCGCCGCAGCGAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCAGATGCGGAGGTTATTGCTTTGTCGCCGAAATCGCTCATGGCGACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAACCTGCAGCTTCACCGACGAGGGCACAACCTCCCGTGGAAGCTGCGACAACGGACGAACAAGGAGGCGATCAAGAAGAAGGTGTATATTTGCCCGGAGAAGACATGTGTCCACCACGATCCGTCGCGAGCCCTCGGCGACCTCACCGGAATAAAGAAACATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGACAAGTGTTCGAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCCTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCAACAAATATTCTCAATAATCTCAGAAATGATTCAATTCTTCTTCATCAACAAGATCCTCACCAATCTTTGATTGATCATCAACAAAATAATCTTCAATCTCTTGGAGATGTTTCTGGGCTTTCCCAATTCACTCATTCAGATCATTTTTTGAGAGATTTTGAAGATCAACAACAGAAGAACAGATCTCCATTGTCACTTTGGTTGAACCAAGCTTCTGCTGATAATGCAATCAACAACAACAATAATAATCTTTCCAACTTTTTTGGAGCTTCTTCTTCCTCTTCCAATCTTTTCGGATCGATAACCGAAAGCGGGCTTTCGATCTTGCCAGTGATTGAGAAGGAAGATGTCGAGAATAAGGGAAGTTTGTCGAAAGCTACGGCGGCGGTGGCGCTGTTGTCGGGTCAATCTTCTCAGTCTGTTGTCTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCTACTAGAAGCAACAACAATAATAATTCTCCGCTCTTCGGAGCGGGTGCTTTCGGAGTAATGAGCTCTTCGTCTTCGTCGTCGTCGTCTTCAAATGCAGTGAACTTGAACTCTCTTAATAAATCTAGAAGCTTCACAATGGCTGACTCGGTGCAAATGGTGGGTAGTAGCTCTAACTTGAGCTCGAATTGTCTCAGCCAACTTCTGCTACCACCCAACGGTAATAATGTTATGAGAAGTAGCGGTCAAACGAGAGACTTCCTCGGAGTCGGGGGAGGAGGAGAAGCACCTCGGCCACCGTTCCTCCCACCGGAGCTAGCGAAATTTGCCACCATAAACTCAACAATGGGACTAAGCCAATTCGCCGCCAATCACTAA 1479 45.71 MSSNPFSLLSSTTTGFAPQQDHANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEAIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSILLHQQDPHQSLIDHQQNNLQSLGDVSGLSQFTHSDHFLRDFEDQQQKNRSPLSLWLNQASADNAINNNNNNLSNFFGASSSSSNLFGSITESGLSILPVIEKEDVENKGSLSKATAAVALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNNSPLFGAGAFGVMSSSSSSSSSSNAVNLNSLNKSRSFTMADSVQMVGSSSNLSSNCLSQLLLPPNGNNVMRSSGQTRDFLGVGGGGEAPRPPFLPPELAKFATINSTMGLSQFAANH 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71233370 71236644 - Tan0020787.1 Tan08g1892 761784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1892 492 FunFam protein indeterminate-domain 12-like 46 115 - -
Tan08g1892 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 461 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan08g1892 492 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 170 209 - -
Tan08g1892 492 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 105 139 - -
Tan08g1892 492 MobiDBLite consensus disorder prediction 1 51 - -
Tan08g1892 492 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 143 167 - -
Tan08g1892 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Tan08g1892 492 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Tan08g1892 492 Gene3D Classic Zinc Finger 46 118 - -
Tan08g1892 492 SMART c2h2final6 144 164 IPR013087 -
Tan08g1892 492 SMART c2h2final6 109 139 IPR013087 -
Tan08g1892 492 SMART c2h2final6 67 89 IPR013087 -
Tan08g1892 492 Pfam Zinc finger, C2H2 type 67 89 IPR013087 -
Tan08g1892 492 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Tan08g1892 492 MobiDBLite consensus disorder prediction 1 23 - -
Tan08g1892 492 Gene3D Classic Zinc Finger 119 201 - -
Tan08g1892 492 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1769 Tan-Chr4:49292463 Tan08g1892 Tan-Chr8:71233370 2.70E-85 dispersed
Tan04g2759 Tan-Chr4:87095696 Tan08g1892 Tan-Chr8:71233370 4.60E-89 dispersed
Tan06g0162 Tan-Chr6:1498890 Tan08g1892 Tan-Chr8:71233370 8.50E-88 dispersed
Tan06g1021 Tan-Chr6:9141105 Tan08g1892 Tan-Chr8:71233370 6.80E-84 dispersed
Tan06g1022 Tan-Chr6:9141105 Tan08g1892 Tan-Chr8:71233370 8.50E-81 dispersed
Tan08g1892 Tan-Chr8:71233370 Tan09g0200 Tan-Chr9:11128365 9.20E-81 dispersed
Tan03g1047 Tan-Chr3:66769510 Tan08g1892 Tan-Chr8:71233370 4.40E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28214 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1892 K25870 - csv:101213422 746.117