Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1920 ATGGAGCAAGCGTTCTCAGACTTCGACATAGCTGGAGATATCTTTGATTTGTACTTCCCCCGAACTGTCTTCACCGTTGAAAATGGATGGCTTAAGCTCATTTCTCAGCTCATTTTCTTCTTTTCTTCTCCGGCAGGTCGACATCTCGCTTCACAGGCTACCGATGATGGTCGAGGCATCTTTATTTTGTCAATTGACTTTCAACAATTCAGGAAGATTTGCGATCAACATGAATTTTACCTAATGGTAGAGGAAAATCCTAAAGTTGCTCTCCAATGTATGAGTGCTGCACTTCACCAGGTTCTGAGGACCAAATGGGCGCACAATTCAGAAGAAGTCGCAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCTATGCTTGCTTTGAAAAACTTGAAAACAGCATATATTGACAAGCTTGTATCAGTGCGCGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCAAAGTGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAACCCCATTCGATCTACTGCTGAAGCAATCGACTTTCAAAAAATACGGTTGCAAGAACTCACTAAATCTGATGATCATGAAGAAGGCAGGGTGCCTCGTACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTTATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGTAGAAATCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAGTAAAAAATTCCAAGTCCCAATCTACACCTGAGGAGTTGCAAGATTCTAACTCTAATGCTAGAACAACGGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCAGATGTCTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCTGGAATAACACTAGCACTATTTGGTGGCGTAAGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGCCATAGTTGTTGGCGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCAGCTGCAGCTGTTTCTCCACGAGGCATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACCAATGACTATGCTTTTGAGGCCGGGGCTATGGTACTTGCAGATGGTGGATTGTGCTGTATAGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCCATGGAACAACAATGTGTATCTATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTGTTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTACTGCTCTTCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATATGGGGAACGCGCTTCTACAGCCAAAAGACTACGTAAAGATATATCTCCTTTGGCTTTAAAGAATGTAGCAATGGATAACGATGGAAAAGAAGATGCTTGTTCAAAAGGCGAGTCTTTAGTTTCAAGACTGCGATTGGACCCAGTGAAAGATGGCGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAAATTTTGTGTTCCCCAGGATGTCAAAGCCAGCAGCAGACATCCTGCAAAAATTTTACTTGCGACTTCGTGACCAGAATACATCAGCGGATAGTACACCAATTACAGCAAGGCAACTAGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGGGTAGACCTCAGGGAAGAAATTACTGTACAAGATGCCACGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGACGAACACGGGGTCCTGGATTTTGGTCGGAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTCTGAGTGCACTCAACAAGCAATCAGAATTGCAGCAGAAAGATTGTTTCTCTATCTCGGAAATATATAGCTTGGCAGATAGGATTGGTCTACGAGTACCTGACATTGATACATTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGGTGCTGTCCTCATCTTACACCAGTCAATCAACAAGGTCAAGAGGATAA 2382 42.02 MEQAFSDFDIAGDIFDLYFPRTVFTVENGWLKLISQLIFFFSSPAGRHLASQATDDGRGIFILSIDFQQFRKICDQHEFYLMVEENPKVALQCMSAALHQVLRTKWAHNSEEVAKILVRLHNYSESMLALKNLKTAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKSRNQGFYYLYLEAVSVKNSKSQSTPEELQDSNSNARTTELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHAIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSTALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASTAKRLRKDISPLALKNVAMDNDGKEDACSKGESLVSRLRLDPVKDGDFVPLPGQLLRKYIAYARNFVFPRMSKPAADILQKFYLRLRDQNTSADSTPITARQLESLVRLAEARARVDLREEITVQDATDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71479131 71486424 + Tan0000118.1 Tan08g1920 761812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1920 793 Gene3D - 314 702 IPR027417 -
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Tan08g1920 793 SMART mcm 126 694 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
Tan08g1920 793 Gene3D - 130 260 IPR012340 -
Tan08g1920 793 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 56 778 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Tan08g1920 793 SMART AAA_5 380 532 IPR003593 GO:0016887(InterPro)
Tan08g1920 793 CDD MCM8_WHD 715 780 - -
Tan08g1920 793 Pfam MCM OB domain 130 259 IPR033762 -
Tan08g1920 793 Gene3D - 157 207 - -
Tan08g1920 793 CDD MCM8 340 692 - -
Tan08g1920 793 FunFam DNA helicase MCM8 isoform X1 157 208 - -
Tan08g1920 793 Coils Coil 451 471 - -
Tan08g1920 793 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 Pfam MCM AAA-lid domain 610 693 IPR041562 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1920 K10737 - - csv:101211972 1445.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1920 Tan-Chr8:71479131 Tan10g1476 Tan-Chr10:21353966 1.90E-75 dispersed
Tan08g1920 Tan-Chr8:71479131 Tan08g1921 Tan-Chr8:71479131 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g2129 . 106 798 Core DNA Replication Machinery Family AT4G14700 67.5 7.6e-274 940.6
Tan10g2131 . 140 832 Core DNA Replication Machinery Family AT4G14700 67.5 7.6e-274 940.6
Tan10g2130 . 106 757 Core DNA Replication Machinery Family AT4G14700 63.3 5.0e-249 858.2
Tan10g2129 . 73 798 Core DNA Replication Machinery Family AT4G12620 68.2 1.8e-283 972.6
Tan10g2131 . 107 832 Core DNA Replication Machinery Family AT4G12620 68.2 1.8e-283 972.6
Tan10g2130 . 73 757 Core DNA Replication Machinery Family AT4G12620 64.2 9.1e-259 890.6
Tan02g1876 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.7 1.9e-141 499.6
Tan02g1877 . 1 277 Core DNA Replication Machinery Family AT2G37560 66.1 1.3e-108 390.6
Tan04g1369 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1370 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1371 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1373 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.7e-155 546.6
Tan04g1374 . 9 362 Core DNA Replication Machinery Family AT2G01120 66.8 4.3e-135 478.8
Tan04g1372 . 2 351 Core DNA Replication Machinery Family AT2G01120 65.5 4.9e-131 465.3
Tan04g1375 . 9 382 Core DNA Replication Machinery Family AT2G01120 58.0 3.2e-130 462.6
Tan06g2023 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2024 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2025 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan06g2026 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 1.9e-175 613.2
Tan08g0428 . 50 333 Core DNA Replication Machinery Family AT1G26840 62.8 5.5e-94 341.7
Tan08g0893 . 1 282 Core DNA Replication Machinery Family AT1G26840 63.7 6.1e-93 338.2
Tan08g0895 . 1 282 Core DNA Replication Machinery Family AT1G26840 63.7 6.1e-93 338.2
Tan08g0429 . 50 311 Core DNA Replication Machinery Family AT1G26840 61.8 3.9e-84 308.9
Tan08g0894 . 1 211 Core DNA Replication Machinery Family AT1G26840 62.0 4.5e-64 242.3
Tan02g0055 . 1 798 Core DNA Replication Machinery Family AT1G79150 59.3 3.0e-249 859.0
Tan10g1476 . 1 939 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1345.5
Tan03g2685 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 8.3e-267 916.8
Tan02g0770 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.8 0.0e+00 1174.5
Tan08g0333 . 974 1708 Core DNA Replication Machinery Family AT2G07690 78.0 0.0e+00 1109.7
Tan03g2893 . 7 821 Core DNA Replication Machinery Family AT5G44635 72.2 0.0e+00 1181.8
Tan06g0728 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1210.3
Tan05g0459 . 43 468 Core DNA Replication Machinery Family AT2G29680 62.2 7.9e-152 534.6
Tan05g0460 . 43 468 Core DNA Replication Machinery Family AT2G29680 62.2 7.9e-152 534.6
Tan11g0836 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0837 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0838 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0840 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0843 . 32 441 Core DNA Replication Machinery Family AT2G29680 62.4 9.0e-148 521.2
Tan11g0839 . 32 434 Core DNA Replication Machinery Family AT2G29680 61.5 8.8e-143 504.6
Tan05g0461 . 43 431 Core DNA Replication Machinery Family AT2G29680 61.2 6.7e-135 478.4
Tan11g0841 . 32 406 Core DNA Replication Machinery Family AT2G29680 61.3 2.6e-131 466.5
Tan11g0842 . 32 376 Core DNA Replication Machinery Family AT2G29680 60.9 8.8e-119 424.9
Tan05g0461 . 52 430 Core DNA Replication Machinery Family AT1G07270 64.1 3.0e-137 486.1
Tan05g0459 . 52 429 Core DNA Replication Machinery Family AT1G07270 64.0 8.7e-137 484.6
Tan05g0460 . 52 429 Core DNA Replication Machinery Family AT1G07270 64.0 8.7e-137 484.6
Tan11g0841 . 32 403 Core DNA Replication Machinery Family AT1G07270 63.4 6.5e-132 468.4
Tan11g0836 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0837 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0838 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0839 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0840 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0843 . 32 402 Core DNA Replication Machinery Family AT1G07270 63.3 1.9e-131 466.8
Tan11g0842 . 32 376 Core DNA Replication Machinery Family AT1G07270 62.9 4.3e-120 429.1
Tan06g1260 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.3 2.7e-260 895.2
Tan08g1920 . 26 792 Core DNA Replication Machinery Family AT3G09660 75.6 0.0e+00 1128.2
Tan08g1921 . 9 661 Core DNA Replication Machinery Family AT3G09660 80.3 7.5e-298 1020.4
Tan02g1195 . 16 645 Core DNA Replication Machinery Family AT2G14050 78.5 1.3e-289 992.6
Tan02g1194 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.4 2.2e-287 985.3
Tan05g1140 . 1 411 Core DNA Replication Machinery Family AT2G20980 55.9 9.0e-119 424.5
Tan05g1141 . 1 333 Core DNA Replication Machinery Family AT2G20980 60.4 8.1e-112 401.4
Tan01g4061 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.8 2.8e-262 902.5
Tan06g0389 . 1 197 Core DNA Replication Machinery Family AT1G80190 67.0 5.9e-74 274.6
Tan06g0390 . 1 197 Core DNA Replication Machinery Family AT1G80190 67.0 5.9e-74 274.6
Tan01g0535 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 1.2e-60 229.9
Tan11g0277 . 1 184 Core DNA Replication Machinery Family AT1G19080 61.4 2.2e-59 226.1
Tan11g0278 . 1 184 Core DNA Replication Machinery Family AT1G19080 61.4 2.2e-59 226.1
Tan11g0277 . 1 184 Core DNA Replication Machinery Family AT3G55490 61.4 2.2e-59 226.1
Tan11g0278 . 1 184 Core DNA Replication Machinery Family AT3G55490 61.4 2.2e-59 226.1
Tan10g0235 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.0 3.3e-50 195.7
Tan05g1616 . 1 1547 Core DNA Replication Machinery Family AT5G67100 60.2 0.0e+00 1758.8
Tan04g0094 . 2 622 Core DNA Replication Machinery Family AT1G67630 62.7 4.0e-222 768.5
Tan04g0095 . 2 590 Core DNA Replication Machinery Family AT1G67630 59.5 8.9e-206 714.1
Tan06g1509 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 2.2e-183 639.4
Tan10g1855 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan10g1856 . 117 566 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan10g1857 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 7.0e-176 614.4
Tan03g1272 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1800.4
Tan08g1499 . 1 438 Core DNA Replication Machinery Family AT2G42120 76.3 1.1e-205 713.4
Tan06g1509 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 2.2e-183 639.4
Tan05g0138 . 1 2094 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2974.1
Tan05g2135 . 1 1612 Core DNA Replication Machinery Family AT1G08260 66.1 0.0e+00 2120.5
Tan05g0138 . 9 2201 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2936.7
Tan05g2135 . 1 1719 Core DNA Replication Machinery Family AT2G27120 63.7 0.0e+00 2141.7
Tan05g1723 . 7 486 Core DNA Replication Machinery Family AT5G22110 69.0 1.5e-192 669.8
Tan05g1724 . 7 486 Core DNA Replication Machinery Family AT5G22110 69.0 1.5e-192 669.8
Tan05g0066 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.6 1.1e-305 1046.6
Tan01g1944 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.4 1.6e-172 602.8
Tan03g0578 . 1 354 Core DNA Replication Machinery Family AT5G27740 86.4 1.6e-180 629.4
Tan03g0579 . 1 354 Core DNA Replication Machinery Family AT5G27740 86.4 1.6e-180 629.4
Tan03g0580 . 11 288 Core DNA Replication Machinery Family AT5G27740 88.1 8.3e-140 494.2
Tan03g0581 . 11 288 Core DNA Replication Machinery Family AT5G27740 88.1 8.3e-140 494.2
Tan01g4059 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.2 8.8e-152 533.9
Tan11g1257 . 1 243 Core DNA Replication Machinery Family AT1G77470 77.4 5.6e-99 358.6
Tan08g0026 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 8.2e-252 867.1
Tan01g2266 . 34 700 Core DNA Replication Machinery Family AT2G06510 50.7 7.8e-194 674.5
Tan09g2042 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 4.2e-245 844.7
Tan01g2266 . 10 802 Core DNA Replication Machinery Family AT5G45400 51.3 5.5e-222 768.5
Tan09g2042 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.3 3.1e-238 822.0
Tan01g2266 . 5 796 Core DNA Replication Machinery Family AT4G19130 52.6 5.7e-218 755.0
Tan09g0027 . 1 172 Core DNA Replication Machinery Family AT5G26680 90.7 1.2e-84 311.2
Tan09g0026 . 1 251 Core DNA Replication Machinery Family AT5G26680 62.3 6.9e-77 285.4
Tan10g0439 . 1 1113 Core DNA Replication Machinery Family AT1G08840 52.4 7.0e-296 1014.2
Tan10g1283 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 1.0e-113 407.1
Tan05g0202 . 168 804 Core DNA Replication Machinery Family AT1G08130 77.6 9.0e-296 1013.4
Tan05g0202 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.3 6.7e-244 840.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009089 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 34