Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1920 ATGGAGCAAGCGTTCTCAGACTTCGACATAGCTGGAGATATCTTTGATTTGTACTTCCCCCGAACTGTCTTCACCGTTGAAAATGGATGGCTTAAGCTCATTTCTCAGCTCATTTTCTTCTTTTCTTCTCCGGCAGGTCGACATCTCGCTTCACAGGCTACCGATGATGGTCGAGGCATCTTTATTTTGTCAATTGACTTTCAACAATTCAGGAAGATTTGCGATCAACATGAATTTTACCTAATGGTAGAGGAAAATCCTAAAGTTGCTCTCCAATGTATGAGTGCTGCACTTCACCAGGTTCTGAGGACCAAATGGGCGCACAATTCAGAAGAAGTCGCAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCTATGCTTGCTTTGAAAAACTTGAAAACAGCATATATTGACAAGCTTGTATCAGTGCGCGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCAAAGTGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAACCCCATTCGATCTACTGCTGAAGCAATCGACTTTCAAAAAATACGGTTGCAAGAACTCACTAAATCTGATGATCATGAAGAAGGCAGGGTGCCTCGTACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTTATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGTAGAAATCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAGTAAAAAATTCCAAGTCCCAATCTACACCTGAGGAGTTGCAAGATTCTAACTCTAATGCTAGAACAACGGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCAGATGTCTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCTGGAATAACACTAGCACTATTTGGTGGCGTAAGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGCCATAGTTGTTGGCGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCAGCTGCAGCTGTTTCTCCACGAGGCATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACCAATGACTATGCTTTTGAGGCCGGGGCTATGGTACTTGCAGATGGTGGATTGTGCTGTATAGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCCATGGAACAACAATGTGTATCTATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTGTTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTACTGCTCTTCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATATGGGGAACGCGCTTCTACAGCCAAAAGACTACGTAAAGATATATCTCCTTTGGCTTTAAAGAATGTAGCAATGGATAACGATGGAAAAGAAGATGCTTGTTCAAAAGGCGAGTCTTTAGTTTCAAGACTGCGATTGGACCCAGTGAAAGATGGCGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAAATTTTGTGTTCCCCAGGATGTCAAAGCCAGCAGCAGACATCCTGCAAAAATTTTACTTGCGACTTCGTGACCAGAATACATCAGCGGATAGTACACCAATTACAGCAAGGCAACTAGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGGGTAGACCTCAGGGAAGAAATTACTGTACAAGATGCCACGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGACGAACACGGGGTCCTGGATTTTGGTCGGAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTCTGAGTGCACTCAACAAGCAATCAGAATTGCAGCAGAAAGATTGTTTCTCTATCTCGGAAATATATAGCTTGGCAGATAGGATTGGTCTACGAGTACCTGACATTGATACATTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGGTGCTGTCCTCATCTTACACCAGTCAATCAACAAGGTCAAGAGGATAA 2382 42.02 MEQAFSDFDIAGDIFDLYFPRTVFTVENGWLKLISQLIFFFSSPAGRHLASQATDDGRGIFILSIDFQQFRKICDQHEFYLMVEENPKVALQCMSAALHQVLRTKWAHNSEEVAKILVRLHNYSESMLALKNLKTAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKSRNQGFYYLYLEAVSVKNSKSQSTPEELQDSNSNARTTELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHAIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSTALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASTAKRLRKDISPLALKNVAMDNDGKEDACSKGESLVSRLRLDPVKDGDFVPLPGQLLRKYIAYARNFVFPRMSKPAADILQKFYLRLRDQNTSADSTPITARQLESLVRLAEARARVDLREEITVQDATDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71479131 71486424 + Tan0000118.1 Tan08g1920 761812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1920 793 Gene3D - 314 702 IPR027417 -
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Tan08g1920 793 SMART mcm 126 694 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
Tan08g1920 793 Gene3D - 130 260 IPR012340 -
Tan08g1920 793 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 56 778 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Tan08g1920 793 SMART AAA_5 380 532 IPR003593 GO:0016887(InterPro)
Tan08g1920 793 CDD MCM8_WHD 715 780 - -
Tan08g1920 793 Pfam MCM OB domain 130 259 IPR033762 -
Tan08g1920 793 Gene3D - 157 207 - -
Tan08g1920 793 CDD MCM8 340 692 - -
Tan08g1920 793 FunFam DNA helicase MCM8 isoform X1 157 208 - -
Tan08g1920 793 Coils Coil 451 471 - -
Tan08g1920 793 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Tan08g1920 793 Pfam MCM AAA-lid domain 610 693 IPR041562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1920 Tan-Chr8:71479131 Tan10g1476 Tan-Chr10:21353966 1.90E-75 dispersed
Tan08g1920 Tan-Chr8:71479131 Tan08g1921 Tan-Chr8:71479131 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1920 K10737 - csv:101211972 1445.25