Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan08g1921 | ATGTTATTTTGGGACATGACAGACAAGCTTGTATCAGTGCGCGGTACTGTTGTTAAAGTTAGCACTGTCAAGCCTTTGGTGGTGCAAATGAGCTTTGATTGTGCAAAGTGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAACCCCATTCGATCTACTGCTGAAGCAATCGACTTTCAAAAAATACGGTTGCAAGAACTCACTAAATCTGATGATCATGAAGAAGGCAGGGTGCCTCGTACTGTAGAATGTGAACTGACTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTTATTAATAATTACATGGATATTGGAGGAGGAAAATCGAAGAGTAGAAATCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAGTAAAAAATTCCAAGTCCCAATCTACACCTGAGGAGTTGCAAGATTCTAACTCTAATGCTAGAACAACGGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCAGATGTCTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCTGGAATAACACTAGCACTATTTGGTGGCGTAAGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGGGATATTCATGCCATAGTTGTTGGCGATCCTGGACTTGGCAAAAGTCAACTACTGCAAGCAGCTGCAGCTGTTTCTCCACGAGGCATTTATGTTTGTGGTAATGCAACAACCAAGGCGGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACCAATGACTATGCTTTTGAGGCCGGGGCTATGGTACTTGCAGATGGTGGATTGTGCTGTATAGATGAGTTTGATAAAATGTCTGCAGAACATCAGGCCCTACTGGAAGCCATGGAACAACAATGTGTATCTATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACTTCTGTTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGTACTGCTCTTCTCTCGAGATTTGATTTAGTTTTCATATTGCTGGATAAACCTGACGAATTTCTGGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATATGGGGAACGCGCTTCTACAGCCAAAAGACTACGTAAAGATATATCTCCTTTGGCTTTAAAGAATGTAGCAATGGATAACGATGGAAAAGAAGATGCTTGTTCAAAAGGCGAGTCTTTAGTTTCAAGACTGCGATTGGACCCAGTGAAAGATGGCGATTTTGTACCATTACCTGGCCAACTTCTTCGCAAATATATAGCCTATGCAAGAAATTTTGTGTTCCCCAGGATGTCAAAGCCAGCAGCAGACATCCTGCAAAAATTTTACTTGCGACTTCGTGACCAGAATACATCAGCGGATAGTACACCAATTACAGCAAGGCAACTAGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGGGTAGACCTCAGGGAAGAAATTACTGTACAAGATGCCACGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGACGAACACGGGGTCCTGGATTTTGGTCGGAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTCTGAGTGCACTCAACAAGCAATCAGAATTGCAGCAGAAAGATTGTTTCTCTATCTCGGAAATATATAGCTTGGCAGATAGGATTGGTCTACGAGTACCTGACATTGATACATTCATAGAAAATCTTAACAGTGTTGGATATCTGCTTAAGAAGGGGCCAAAGACATACCAGGTGCTGTCCTCATCTTACACCAGTCAATCAACAAGGTCAAGAGGATAA | 1989 | 42.03 | MLFWDMTDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKSRNQGFYYLYLEAVSVKNSKSQSTPEELQDSNSNARTTELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHAIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSTALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASTAKRLRKDISPLALKNVAMDNDGKEDACSKGESLVSRLRLDPVKDGDFVPLPGQLLRKYIAYARNFVFPRMSKPAADILQKFYLRLRDQNTSADSTPITARQLESLVRLAEARARVDLREEITVQDATDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG | 662 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 71479131 | 71486424 | + | Tan0000118.2 | Tan08g1921 | 761813 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan08g1921 | 662 | CDD | MCM8_WHD | 584 | 649 | - | - | |
| Tan08g1921 | 662 | Pfam | MCM AAA-lid domain | 479 | 562 | IPR041562 | - | |
| Tan08g1921 | 662 | Pfam | MCM OB domain | 7 | 128 | IPR033762 | - | |
| Tan08g1921 | 662 | CDD | MCM8 | 209 | 561 | - | - | |
| Tan08g1921 | 662 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 308 | 322 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan08g1921 | 662 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 359 | 371 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan08g1921 | 662 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 335 | 348 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan08g1921 | 662 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 248 | 263 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan08g1921 | 662 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 386 | 394 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan08g1921 | 662 | Coils | Coil | 320 | 340 | - | - | |
| Tan08g1921 | 662 | Gene3D | - | 6 | 129 | IPR012340 | - | |
| Tan08g1921 | 662 | SUPERFAMILY | Nucleic acid-binding proteins | 5 | 129 | IPR012340 | - | |
| Tan08g1921 | 662 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 7 | 647 | IPR031327 | GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Tan08g1921 | 662 | ProSiteProfiles | MCM family domain profile. | 205 | 412 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan08g1921 | 662 | SMART | AAA_5 | 249 | 401 | IPR003593 | GO:0016887(InterPro) | |
| Tan08g1921 | 662 | Pfam | MCM P-loop domain | 203 | 416 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Tan08g1921 | 662 | Gene3D | - | 183 | 571 | IPR027417 | - | |
| Tan08g1921 | 662 | FunFam | DNA helicase MCM8 isoform X1 | 26 | 77 | - | - | |
| Tan08g1921 | 662 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 215 | 568 | IPR027417 | - | |
| Tan08g1921 | 662 | Gene3D | - | 26 | 76 | - | - | |
| Tan08g1921 | 662 | SMART | mcm | 2 | 563 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan08g1921 | Tan-Chr8:71479131 | Tan10g1476 | Tan-Chr10:21353966 | 1.20E-72 | dispersed | |
| Tan08g1920 | Tan-Chr8:71479131 | Tan08g1921 | Tan-Chr8:71479131 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan08g1921 | K10737 | - | csv:101211972 | 1194.1 |