Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1924 ATGGCTGATGCTCCGGCGAGCCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGGGAACAGGATAGGTTTCTTCCAATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCGGCGAATGGGAAGATTGCGAAGGATGCTAAAGAGACCGTACAAGAATGTGTATCGGAGTTCATCAGTTTTATCACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGTAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCCAAAGGTGGCGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTGGTGCTCAGATTGCTCATCAAGGGTCGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAATCACAAGCCCAGCATCTGATGGTTCCTATGCAAGGCACAGACTAA 522 47.7 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHSTPGAQIAHQGSFSQGVNYGSSQSQAQHLMVPMQGTD 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71507496 71511440 - Tan0016246.1 Tan08g1924 761816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1924 173 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Tan08g1924 173 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g1924 173 MobiDBLite consensus disorder prediction 117 173 - -
Tan08g1924 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Tan08g1924 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 158 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan08g1924 173 MobiDBLite consensus disorder prediction 1 28 - -
Tan08g1924 173 MobiDBLite consensus disorder prediction 117 132 - -
Tan08g1924 173 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Tan08g1924 173 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Tan08g1924 173 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Tan08g1924 173 MobiDBLite consensus disorder prediction 141 173 - -
Tan08g1924 173 SUPERFAMILY Histone-fold 27 135 IPR009072 GO:0046982(InterPro)
Tan08g1924 173 Gene3D Histone, subunit A 17 152 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1846 Tan-Chr1:19712099 Tan08g1924 Tan-Chr8:71507496 9.20E-35 dispersed
Tan04g0389 Tan-Chr4:3218497 Tan08g1924 Tan-Chr8:71507496 3.30E-60 dispersed
Tan06g0851 Tan-Chr6:7081433 Tan08g1924 Tan-Chr8:71507496 1.00E-36 dispersed
Tan08g1924 Tan-Chr8:71507496 Tan08g1926 Tan-Chr8:71507496 3.70E-61 dispersed
Tan08g1924 Tan-Chr8:71507496 Tan08g1925 Tan-Chr8:71507496 1.70E-85 tandem
Tan01g1324 Tan-Chr1:13016907 Tan08g1924 Tan-Chr8:71507496 8.30E-43 transposed
Tan05g0985 Tan-Chr5:8191785 Tan08g1924 Tan-Chr8:71507496 2.20E-44 transposed
Tan04g0387 Tan-Chr4:3218497 Tan08g1924 Tan-Chr8:71507496 2.20E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28217 PF00808 CBFD_NFYB_HMF 7.80E-28 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1924 K08065 - csv:101212699 327.405