Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1925 ATGGCTGATGCTCCGGCGAGCCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGGGAACAGGATAGGTTTCTTCCAATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCGGCGAATGGGAAGATTGCGAAGGATGCTAAAGAGACCGTACAAGAATGTGTATCGGAGTTCATCAGTTTTATCACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGTAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCCAAAGGTGGCGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTGGTGCTCAGATTGCTCATCAAGGGTCGTTTTCCCAAGGAGTTAATTATGGAAGTTCTCAAGTACTCTCCCTCTCTCTCACTCACACACACACACATAAAAACAAGCATGTACTTTCACAATGTCCTTTGAAGAAGCAAAGAAGCATTCTGCTAGTGTACTTAGGGTGA 585 46.5 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHSTPGAQIAHQGSFSQGVNYGSSQVLSLSLTHTHTHKNKHVLSQCPLKKQRSILLVYLG 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71507496 71511440 - Tan0016246.2 Tan08g1925 761817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1925 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 155 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Tan08g1925 194 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Tan08g1925 194 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Tan08g1925 194 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Tan08g1925 194 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g1925 194 MobiDBLite consensus disorder prediction 117 141 - -
Tan08g1925 194 SUPERFAMILY Histone-fold 27 134 IPR009072 GO:0046982(InterPro)
Tan08g1925 194 MobiDBLite consensus disorder prediction 1 28 - -
Tan08g1925 194 Gene3D Histone, subunit A 17 151 IPR009072 GO:0046982(InterPro)
Tan08g1925 194 MobiDBLite consensus disorder prediction 117 132 - -
Tan08g1925 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Tan08g1925 194 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g0390 Tan-Chr4:3218497 Tan08g1925 Tan-Chr8:71507496 1.10E-60 dispersed
Tan05g0985 Tan-Chr5:8191785 Tan08g1925 Tan-Chr8:71507496 2.20E-44 dispersed
Tan08g1925 Tan-Chr8:71507496 Tan09g0207 Tan-Chr9:11786449 4.40E-26 dispersed
Tan08g1924 Tan-Chr8:71507496 Tan08g1925 Tan-Chr8:71507496 1.70E-85 tandem
Tan08g1925 Tan-Chr8:71507496 Tan08g1926 Tan-Chr8:71507496 4.20E-61 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28218 PF00808 CBFD_NFYB_HMF 1.00E-27 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1925 K08065 - csv:101212699 299.286