Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1926 ATGGCTGATGCTCCGGCGAGCCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGGGAACAGGATAGGTTTCTTCCAATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCGGCGAATGGGAAGATTGCGAAGGATGCTAAAGAGACCGTACAAGAATGTGTATCGGAGTTCATCAGTTTTATCACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGTAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGTACTCAGTCGGTTAATGCTAATGCATTGTCGGCCATTCTATCACTGTGTTCTGTTACTCTGA 408 46.57 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREVLSRLMLMHCRPFYHCVLLL 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71507496 71511440 - Tan0016246.3 Tan08g1926 761818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1926 135 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g1926 135 Gene3D Histone, subunit A 17 120 IPR009072 GO:0046982(InterPro)
Tan08g1926 135 FunFam Nuclear transcription factor Y subunit B-3 19 124 - -
Tan08g1926 135 MobiDBLite consensus disorder prediction 1 27 - -
Tan08g1926 135 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Tan08g1926 135 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Tan08g1926 135 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Tan08g1926 135 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Tan08g1926 135 SUPERFAMILY Histone-fold 27 117 IPR009072 GO:0046982(InterPro)
Tan08g1926 135 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 116 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1924 Tan-Chr8:71507496 Tan08g1926 Tan-Chr8:71507496 3.70E-61 dispersed
Tan08g1926 Tan-Chr8:71507496 Tan09g0207 Tan-Chr9:11786449 4.00E-26 dispersed
Tan08g1925 Tan-Chr8:71507496 Tan08g1926 Tan-Chr8:71507496 4.20E-61 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28219 PF00808 CBFD_NFYB_HMF 4.40E-28 CL0012 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1926 K08065 - csv:101212699 233.417