Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1929 ATGGTTTTTGTAGAACGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTCGAAGTTGTTTCCTCCGGTTCGGTTTCCGATTCCGTTGAGATGGTAACTGATAAGTTTCTGCAGTTTCCGGCGAACAGAATGGAAAGCGCCGGAAGTTTCAACTCGTCCTCTGTCGTTAACGGCGATCCTTCCGCCAGCACCACCGGCGACGAGGACTCCTCTTCAAACGCCGACGAGGCTTTCCCGTTCACTTTCGGTAAAGATTACGCGGTTCAAGGAAGCTTAGCGGCGAAATCACTCTGTATTTCCGATGACCATCGCGACCAGACGATGGAGCTCTTCCCGTTAACCGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTTTGTCGGCGCGCCGGAGGGGCAAATAATGGCACCGCCGGCACAGCAACAGCATCAGCCGATGAGGAAGAACCGGCGTGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACCTTTTATCGAAGAACAGGGAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCTCATGCTGCCGCTAGAGCATATGATCGGGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCATTGTCAGTGATTATGATGAAGATATTAAACAGATGAGTAATTTCACGAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCGAGGGGAAGCTCGAAGTACAGAGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGGAAGAAGTACATATATCTTGGTCTTTTTGATAGTGAGATTGAAGCTGCGAGGGCTTACGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAGCCAAGTTCTTATGTGGCAGAGTTGGCTACTGACACAGGAGGGAACAACCAGATTCTTGACCTGAACTTGGCAATTGCTCCCCCAAATCTTTCTGATGCCCAAAGTGAGAGCATTGACATGTTTGGTAATGATTTTCGTCATGGCTCACACGACGTGCTCGTTGATAGAAGAATGACGCTTGAGAACTCTGTTTCAGCAGCAATTAGATCATCTCAGCCATATGGCTTTGCAGTGCCTTCCAATAACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGAGCAACAGAGATGAGAATGGGAGTTGGTTCTTGGGAGTGGCAAATCCATGGCCACTCAAATGGAACAACCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCAACTGCCATTTCATCATCTGCTGTTGGTGAAATCCATTTCCCAGCTATCTTCCATCACCATAGCAACAACTTATCCAACTTCTACTGTAGGAGTTGA 1500 47.93 MVFVERGASNPMLDLNLEVVSSGSVSDSVEMVTDKFLQFPANRMESAGSFNSSSVVNGDPSASTTGDEDSSSNADEAFPFTFGKDYAVQGSLAAKSLCISDDHRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYFVGAPEGQIMAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFIVSDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAELATDTGGNNQILDLNLAIAPPNLSDAQSESIDMFGNDFRHGSHDVLVDRRMTLENSVSAAIRSSQPYGFAVPSNNHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHSNGTTSVPLFSAAASSGFPSSSSSSSSSSSTAISSSAVGEIHFPAIFHHHSNNLSNFYCRS 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71547037 71550732 - Tan0016185.1 Tan08g1929 761821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1929 499 ProSiteProfiles AP2/ERF domain profile. 171 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 SMART rav1_2 263 326 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 SMART rav1_2 171 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 MobiDBLite consensus disorder prediction 149 171 - -
Tan08g1929 499 CDD AP2 262 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 CDD AP2 170 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 80 353 - -
Tan08g1929 499 Pfam AP2 domain 262 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 Pfam AP2 domain 171 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 FunFam AP2-like ethylene-responsive transcription factor 170 229 - -
Tan08g1929 499 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 SUPERFAMILY DNA-binding domain 262 321 IPR016177 GO:0003677(InterPro)
Tan08g1929 499 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677(InterPro)
Tan08g1929 499 MobiDBLite consensus disorder prediction 48 76 - -
Tan08g1929 499 ProSiteProfiles AP2/ERF domain profile. 263 320 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1929 499 Gene3D AP2/ERF domain 262 321 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0303 Tan-Chr5:2284898 Tan08g1929 Tan-Chr8:71547037 1.60E-117 dispersed
Tan05g0304 Tan-Chr5:2284898 Tan08g1929 Tan-Chr8:71547037 1.10E-105 dispersed
Tan05g1634 Tan-Chr5:42524991 Tan08g1929 Tan-Chr8:71547037 5.40E-90 dispersed
Tan05g1635 Tan-Chr5:42524991 Tan08g1929 Tan-Chr8:71547037 4.60E-58 dispersed
Tan08g1929 Tan-Chr8:71547037 Tan09g1597 Tan-Chr9:67738656 1.00E-42 dispersed
Tan08g1929 Tan-Chr8:71547037 Tan08g1930 Tan-Chr8:71547037 1.50E-219 tandem
Tan03g1562 Tan-Chr3:71856120 Tan08g1929 Tan-Chr8:71547037 2.60E-91 transposed
Tan03g1036 Tan-Chr3:66676086 Tan08g1929 Tan-Chr8:71547037 7.00E-112 wgd
Tan04g0382 Tan-Chr4:3195161 Tan08g1929 Tan-Chr8:71547037 2.20E-62 wgd
Tan05g0302 Tan-Chr5:2284898 Tan08g1929 Tan-Chr8:71547037 1.10E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28220 PF00847 AP2 1.40E-09 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1929 K09284 - csv:101211242 767.303