Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1930 ATGGTTTTTGTAGAACGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTCGAAGTTGTTTCCTCCGGTTCGGTTTCCGATTCCGTTGAGATGGTAACTGATAAGTTTCTGCAGTTTCCGGCGAACAGAATGGAAAGCGCCGGAAGTTTCAACTCGTCCTCTGTCGTTAACGGCGATCCTTCCGCCAGCACCACCGGCGACGAGGACTCCTCTTCAAACGCCGACGAGGCTTTCCCGTTCACTTTCGGTAAAGATTACGCGGTTCAAGGAAGCTTAGCGGCGAAATCACTCTGTATTTCCGATGACCATCGCGACCAGACGATGGAGCTCTTCCCGTTAACCGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTTTGTCGGCGCGCCGGAGGGGCAAATAATGGCACCGCCGGCACAGCAACAGCATCAGCCGATGAGGAAGAACCGGCGTGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACCTTTTATCGAAGAACAGGGAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTGGGTGGTTTCGATACTGCTCATGCTGCCGCTAGAGCATATGATCGGGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCATTGTCAGTGATTATGATGAAGATATTAAACAGATGAGTAATTTCACGAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCGAGGGGAAGCTCGAAGTACAGAGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGGAAGAAGTACATATATCTTGGTCTTTTTGATAGTGAGATTGAAGCTGCGAGGGCTTACGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAGCCAAGTTCTTATGTGGCAGAGTTGGCTACTGACACAGGAGGGAACAACCAGATTCTTGACCTGAACTTGGCAATTGCTCCCCCAAATCTTTCTGATGCCCAAAGTGAGAGCATTGACATGTTTGGTAATGATTTTCGTCATGGCTCACACGACGTGCTCGTTGATAGAAGAATGACGGTAATTCTCGAGACTGATTTCTGGAATTCTTTCTCTTGA 1176 48.81 MVFVERGASNPMLDLNLEVVSSGSVSDSVEMVTDKFLQFPANRMESAGSFNSSSVVNGDPSASTTGDEDSSSNADEAFPFTFGKDYAVQGSLAAKSLCISDDHRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYFVGAPEGQIMAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFIVSDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAELATDTGGNNQILDLNLAIAPPNLSDAQSESIDMFGNDFRHGSHDVLVDRRMTVILETDFWNSFS 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71547037 71550732 - Tan0016185.2 Tan08g1930 761822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1930 391 FunFam AP2-like ethylene-responsive transcription factor 170 229 - -
Tan08g1930 391 ProSiteProfiles AP2/ERF domain profile. 171 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 SMART rav1_2 263 326 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 SMART rav1_2 171 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 MobiDBLite consensus disorder prediction 149 171 - -
Tan08g1930 391 CDD AP2 170 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 CDD AP2 262 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 SUPERFAMILY DNA-binding domain 262 321 IPR016177 GO:0003677(InterPro)
Tan08g1930 391 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 MobiDBLite consensus disorder prediction 48 76 - -
Tan08g1930 391 ProSiteProfiles AP2/ERF domain profile. 263 320 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 78 330 - -
Tan08g1930 391 Gene3D AP2/ERF domain 262 321 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 Gene3D AP2/ERF domain 170 228 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 Pfam AP2 domain 171 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 Pfam AP2 domain 262 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan08g1930 391 SUPERFAMILY DNA-binding domain 170 228 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1930 Tan-Chr8:71547037 Tan09g1597 Tan-Chr9:67738656 7.90E-43 dispersed
Tan08g1929 Tan-Chr8:71547037 Tan08g1930 Tan-Chr8:71547037 1.50E-219 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28221 PF00847 AP2 9.90E-10 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1930 K09284 - csv:101211242 627.476