Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1947 ATGGCTGCCCTCAGCGTGGACGAAGTTCTACCTCCGTCGTTGGACGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACCAGGTTGTATACTGCTTACATATGCCCTTATGCTCAACGTGTGTGGATCACTCGGAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTAAACCTTTCTAATAGGCCTGACTGGTATAAAGAAAAAGTGTATCCTACAAACAAGGTGCCATCTTTGGAACATAATGGAAAAATTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACGTTTACTGGCGCAATAATCTCTTCCTTTAAAGGTGACACCATAAAGGAAGCAGGTGCTCAATTTGATTATTTGGAGAACGCTCTGCAAAAATTCGATGGCCCCTTTCTCCTTGGAGAAATCAGTCAGGCGGATATAGCATACATTCCATTTGTTGAAAGGCTCCAAGTTTTCTTATTGGAGGCTCTCAAGATTGACATCACAGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAATTCAACAAGATTGGTGCGTATAAACAAACAAAAGCCGATCCCAAGCTGATCGTTGAAGTTTATACAAATCGATACTTGGTTAAAAACAAATGA 714 41.88 MAALSVDEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLSNRPDWYKEKVYPTNKVPSLEHNGKIIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFTGAIISSFKGDTIKEAGAQFDYLENALQKFDGPFLLGEISQADIAYIPFVERLQVFLLEALKIDITEGRPKLAAWIEEFNKIGAYKQTKADPKLIVEVYTNRYLVKNK 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71630771 71634991 + Tan0014445.2 Tan08g1947 761839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1947 237 FunFam Glutathione S-transferase L2, chloroplastic 1 104 - -
Tan08g1947 237 SUPERFAMILY Thioredoxin-like 21 108 IPR036249 -
Tan08g1947 237 SUPERFAMILY GST C-terminal domain-like 103 231 IPR036282 -
Tan08g1947 237 PANTHER GLUTATHIONE S-TRANSFERASE L1 1 235 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Tan08g1947 237 Gene3D Glutaredoxin 1 104 - -
Tan08g1947 237 Gene3D - 105 236 - -
Tan08g1947 237 FunFam Lambda class glutathione S-transferase 105 235 - -
Tan08g1947 237 Pfam Glutathione S-transferase, N-terminal domain 30 106 IPR004045 -
Tan08g1947 237 SFLD Main (cytGST) 29 208 - -
Tan08g1947 237 SFLD Glutathione Transferase (cytosolic) 29 208 IPR040079 -
Tan08g1947 237 Pfam Glutathione S-transferase, C-terminal domain 146 206 - -
Tan08g1947 237 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 26 107 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1945 Tan-Chr8:71619049 Tan08g1947 Tan-Chr8:71630771 2.50E-90 dispersed
Tan08g1947 Tan-Chr8:71630771 Tan08g1949 Tan-Chr8:71640516 8.10E-67 dispersed
Tan08g1946 Tan-Chr8:71630771 Tan08g1947 Tan-Chr8:71630771 1.00E-133 tandem
Tan08g1947 Tan-Chr8:71630771 Tan08g1948 Tan-Chr8:71639491 3.70E-104 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1947 K00799 - csv:101211241 425.631