Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1952 ATGGTTAAACCCTGCTGGAAACCCCATGATGATGACGATTCGAACGGGCGAGTAGATGGATTGTTGTGGTCTAAGGATCTGGGACACCATGTTTATGGACAATTCTCCATGGCTGTCATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGAATTGAGTATGTCCAATCCAGGTCCGCAGGGGACCTTTGTCGGAGTTTATGATGGTCATGGTGGAACCGAAGCTTCACGGTTCGTCAACGACAATCTCTTCAGCAATCTCAAAAGATATGCATCTTTGCACCAAAACATATCAGAAAACGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGATTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTGGGGATCATTTGCAATGGACAGCTATATATTGCAAATGCGGGCGATTCGCGAGTAGTGCTTGGTAGAACTGAGAGAGCCACTAAAGAAGTCATTGCCATTCAATTGTCCACAGAACACAATGCAAGCATAGAATCAGTGAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCTCAGATTGTGATCTTAAAACACAATGTTTGGCGGGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGTGATGCATATTTGAAAAAGGCAAAGTTCAACAGACCTCCTCTGCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCGATCCTCAGCGCAGAACCATCGATACTCGTACACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGCCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTGTCCTCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGACAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGTAGGCCCTCCCCTTGTTCCTTGTCAATCAGAGGAGGAGAAGGTCTCCCTTCGTCGGCAAACTCCTAG 1113 44.92 MVKPCWKPHDDDDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGELSMSNPGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQNISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATKEVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSCPRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIRGGEGLPSSANS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71647066 71650228 - Tan0005933.2 Tan08g1952 761844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1952 370 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169(InterPro)
Tan08g1952 370 PANTHER PROTEIN PHOSPHATASE 28 341 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Tan08g1952 370 Gene3D - 23 349 IPR036457 -
Tan08g1952 370 ProSiteProfiles PPM-type phosphatase domain profile. 42 342 IPR001932 -
Tan08g1952 370 FunFam Phosphatase 2C family protein 23 351 - -
Tan08g1952 370 Pfam Protein phosphatase 2C 62 311 IPR001932 -
Tan08g1952 370 SMART PP2C_4 12 340 IPR001932 -
Tan08g1952 370 SUPERFAMILY PP2C-like 32 344 IPR036457 -
Tan08g1952 370 CDD PP2Cc 32 342 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1952 Tan-Chr8:71647066 Tan11g0034 Tan-Chr11:639107 1.70E-26 dispersed
Tan08g1951 Tan-Chr8:71647066 Tan08g1952 Tan-Chr8:71647066 4.30E-216 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1952 K01102 - csv:101210750 710.679