Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1954 ATGGAAGTATTAGAACCCCCCACTGTAATCATGGCCGCCCTCTCTGCTCTCTCTCCGCCGCATCTCTCCGATCTCTCTCACTCCATCTTCTCCGACATCCACCACCGCCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCATCGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCGCCGTCCAAGTCCCTCCCCCACCACCCTTCCACCGTCACCCCTCGGGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTACGGCAGCACAATCCGGCTGCCCTCAAAACTCCGATCACCCAATGGCGTTCGACCCTCTGCAGAATCTACTCCGATTCCCTCTTGACGATCTCCGGCGTCGCCACTGGCGGCGCCGGGGTCCTGATTCCGTACATTGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTTGTTGGGAGGTGCAGCGGCGGGAAGGCCAGGAGAGAAGTGGCGGCGTCTCCGGTGGCCGTGGTGGAGCTGCCGTCGGTGGCGGTGGGCGGCGGTGGGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGAGGCGTGTCAATTGCCTTGTGAACACTTATTCCATTGGCTCTGTATTCTTCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACTGATGATATTCTCGGCGAGATCCAACGGCTCTGGGAGATTCTACTCAAGGTGGGCTCCTCATTCGATGGAGATTAA 837 60.45 MEVLEPPTVIMAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPSTVTPRDLDAAVLLLLLCEVRQHNPAALKTPITQWRSTLCRIYSDSLLTISGVATGGAGVLIPYIETVARCWKFVGFVGRCSGGKARREVAASPVAVVELPSVAVGGGGAVECVICKEEMNEGREACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDILGEIQRLWEILLKVGSSFDGD 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71663292 71664791 - Tan0020643.1 Tan08g1954 761846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1954 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 182 254 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Tan08g1954 278 SMART ring_2 208 248 IPR001841 -
Tan08g1954 278 CDD RING-H2_PA-TM-RING 207 249 - -
Tan08g1954 278 ProSiteProfiles Zinc finger RING-type profile. 208 249 IPR001841 -
Tan08g1954 278 SUPERFAMILY RING/U-box 203 255 - -
Tan08g1954 278 Pfam Ring finger domain 207 249 IPR001841 -
Tan08g1954 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 259 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1954 Tan-Chr8:71663292 Tan11g1490 Tan-Chr11:13669736 3.60E-13 dispersed
Tan08g1954 Tan-Chr8:71663292 Tan03g0674 Tan-Chr3:62251494 3.20E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1954 - - - 0.0