Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1964 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATTCCATTTCTAGGTATTCGATCTCGTCGCCGTCGAGAACTCCGGCCTTGACTCCACGGCGAAGCTTCAACGACGCTATGATTGAACAGAGCGTCGAATCTGCGGCGGCGATTGTGATGAAATGGAATCCGGATTCTTCAACTTACGCCAAAGTTACTTCCATGTTCTATGAAGATAAACGAGAAGCCATGCAGTTTATCAAGCGTGTAAATGATCTTCAGAAAGCGATGCATCTGATGGTTTCGGAAGATTCTGGTTCCGCTTCGGAAAGGCTTGTTTACGCTCAAGGATTGATGGAAATCGCCATGAAACGGCTTCAGAAGGAGTTTTATCAGATTCTCTCGATGAATCGCGCTCATCTCGATCCGGAATCTGTTTCTACTCGATCCTCTCGCTGCTCGACTAGATCGAGCACTTCCGTTGATTTCGACGAGGACGGAACCCTAGACGATGAAATTCAAGTCGTAGGGGACTCGATCTCTGAAGTTGAGCAGGTTTCTTTCACTGTCATGGAGGATTTGCGTGTTATAGCTGAGTGTATGATCTCCTCTGGCTACGCTAAAGAGTGCGTTAGTATGTATAAAGTGATTCGAAAATCGATTATCGATGAAGGTGTGTACCGACTCGGACTTGAGAAATTGAGCCCTTCGCGAATCAATAAGATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCACTTAAACTCGCAATTCGAACTCTGTTCGTTGGCGAACGAATTCTCTGCGACCACGTCTTTTCCTCTTCTGAATCGATTGCAGAATCCTGTTTTGCTGATATATCCAGAGAAGGCGCTTTGCTTCTGTTCGGATTTCCTGAACTTGTTGCTAAGAGTAAAAAATCGCCGGAAAAAATGTTCCGTGTTCTTGATATGTATTCATCAATCGCTGAAAATTGGCCGGAGATCGAAGTGATTTTCTCCTCTGAATCCACATCTGTAGTTCGATCTCAAGCGCTGACCTCACTCGCAAAACTCGGCGAGTTAGTCCGTGCGATTGTAATGGATCTCGAGTTGTCGATTCAGAAAAATTCATCCAAATCGCCGGTCGCTGGCGGTGGCGTTCATTCATTGACGATTCTCTCGATGGATTATCTCACTTTCCTCGCCGATTACGGCAACGTTTTGACCGATATTTTCGCCGATTGGATTCCGCCTGAGAAATCCTCTCTCGATCAAATTTTCTTCAGCAATACTTCAGAATCCGAGGACTCTGCAACGGCTTCTGCGATCTCTTTGCGAATGGGATGGCTAATTCTAGTCCTCCTCTGCAAACTCGACAGCAAAGCGAAACGCTACAAAGACGTTTCGCTGTCGTATCTATTCCTCGCTAACAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCAAATCTTCAGTACCTTCTCGGCGACGAGTGGATCACGAAGCACGAGGTGAAAGTAAGGCAATTCGCCGCTAAGTACGAAGTATTGGCTTGGGGCAGAGTTTTCGATTCCTTGCCGGAGAATCCAACGGAGAGATTTTCACAGGAGGAAGCCAAGGAAATCTTCAGGAACTTCAATATGGCATTCCAAGAAACTCATCGGAAACAGAAATCCTGCTTCATTCCTGATTCGAAGCTTCGAGATGAAGTTAAATTATCAATCGGAAGAAAGCTCGTGTCGTTCTATGGAGAACTTTACAGAGCGCAGAAAGCTTACGCCGGTGGTAATGAAAAACCGTACATCAGATTCTCGCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAGCCGTCCGATTGGGCGAGCGTTTCGACCTCGTCGCCGTCGTCGACCTCCTCCTCTCATCGGCGGGAACCGGGGCCCCGTTAA 1923 46.65 MPRKGMRSLLFQFSSPSNSISRYSISSPSRTPALTPRRSFNDAMIEQSVESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLMVSEDSGSASERLVYAQGLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDEDGTLDDEIQVVGDSISEVEQVSFTVMEDLRVIAECMISSGYAKECVSMYKVIRKSIIDEGVYRLGLEKLSPSRINKMDWEVLDLKIKNWLDALKLAIRTLFVGERILCDHVFSSSESIAESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSIAENWPEIEVIFSSESTSVVRSQALTSLAKLGELVRAIVMDLELSIQKNSSKSPVAGGGVHSLTILSMDYLTFLADYGNVLTDIFADWIPPEKSSLDQIFFSNTSESEDSATASAISLRMGWLILVLLCKLDSKAKRYKDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWITKHEVKVRQFAAKYEVLAWGRVFDSLPENPTERFSQEEAKEIFRNFNMAFQETHRKQKSCFIPDSKLRDEVKLSIGRKLVSFYGELYRAQKAYAGGNEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71770631 71772844 - Tan0007123.1 Tan08g1964 761856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1964 640 Pfam Exo70 exocyst complex subunit C-terminal 249 610 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Tan08g1964 640 FunFam Exocyst subunit Exo70 family protein 66 619 - -
Tan08g1964 640 Pfam Exocyst complex component Exo70 N-terminal 49 132 - -
Tan08g1964 640 SUPERFAMILY Cullin repeat-like 75 612 IPR016159 -
Tan08g1964 640 Gene3D Exocyst complex component Exo70 56 618 - -
Tan08g1964 640 PANTHER EXOCYST COMPLEX PROTEIN EXO70 47 613 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Tan08g1964 640 MobiDBLite consensus disorder prediction 618 640 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1964 K07195 - - csv:101208543 1105.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1964 Tan-Chr8:71770631 Tan09g2370 Tan-Chr9:73415933 1.90E-78 dispersed
Tan03g1000 Tan-Chr3:66417460 Tan08g1964 Tan-Chr8:71770631 1.00E-150 wgd
Tan04g0347 Tan-Chr4:2842484 Tan08g1964 Tan-Chr8:71770631 1.20E-146 wgd
Tan05g0340 Tan-Chr5:2551565 Tan08g1964 Tan-Chr8:71770631 2.50E-176 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0719 . 10 653 EXO70 exocyst subunit family AT5G03540 76.1 2.5e-283 971.8
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 9.7e-267 916.8
Tan04g2073 . 9 303 EXO70 exocyst subunit family AT5G03540 59.5 2.4e-108 390.6
Tan03g1260 . 1 638 EXO70 exocyst subunit family AT5G52340 79.6 3.8e-297 1017.7
Tan04g0719 . 12 653 EXO70 exocyst subunit family AT5G52340 73.7 4.0e-270 927.9
Tan04g2073 . 4 303 EXO70 exocyst subunit family AT5G52340 59.9 1.3e-116 417.9
Tan03g0677 . 1 130 EXO70 exocyst subunit family AT5G52340 51.2 4.0e-44 177.2
Tan03g1260 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 1.3e-174 610.5
Tan04g0719 . 147 653 EXO70 exocyst subunit family AT5G52350 59.3 1.4e-165 580.5
Tan08g2409 . 1 628 EXO70 exocyst subunit family AT5G58430 67.2 9.4e-248 853.6
Tan08g2409 . 1 627 EXO70 exocyst subunit family AT1G07000 52.0 4.2e-176 615.5
Tan10g1341 . 59 672 EXO70 exocyst subunit family AT5G13150 53.3 1.5e-174 610.5
Tan11g1421 . 141 712 EXO70 exocyst subunit family AT5G13150 50.2 2.2e-162 570.1
Tan11g1421 . 114 713 EXO70 exocyst subunit family AT5G13990 53.1 7.4e-185 644.8
Tan04g2865 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 2.3e-217 752.7
Tan04g2865 . 9 607 EXO70 exocyst subunit family AT1G54090 62.3 1.6e-210 729.9
Tan04g2865 . 9 608 EXO70 exocyst subunit family AT3G14090 64.8 1.2e-221 766.9
Tan05g2961 . 16 652 EXO70 exocyst subunit family AT5G50380 65.0 1.8e-236 816.2
Tan09g2370 . 14 651 EXO70 exocyst subunit family AT5G50380 62.7 2.2e-229 792.7
Tan02g2612 . 13 669 EXO70 exocyst subunit family AT4G31540 71.9 9.9e-283 969.9
Tan04g0347 . 20 621 EXO70 exocyst subunit family AT3G55150 50.6 1.7e-156 550.4
Tan04g0347 . 24 613 EXO70 exocyst subunit family AT2G39380 51.2 1.2e-157 554.3
Tan08g1964 . 26 631 EXO70 exocyst subunit family AT3G09520 55.4 1.2e-178 624.0
Tan05g0340 . 16 600 EXO70 exocyst subunit family AT5G59730 50.6 7.8e-157 551.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007378 1 1 2 1 2 1 0 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 2 2 1 1 36