Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1981 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTGCAAATGAGCCGCTGGGGAAAGAGAGCGCTTCGGATACCGAATTGAAGCGAGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACTAGTCAGCCAGAAGAACAAGAAAATACCAACCAAGTCGAGCGCGGGGACCTTACATCAGCTTGTTCGGGAAATTCAAGCTCAGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAACAACACGTCTCAAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCATGTCAGGTGGCAAAGTTCATTCTTATGGAAACTCCGACAAGGACTGTAAACCTGAACCATCATCGGTTGATGATGCTTACACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTTCAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTGAAGTATATATCTACGACAAGTGAGATAAAGCTAAATGGTCTTATAAATGGCGGAGGCTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTACGAGTTTGAACAGCATGCTGGTCTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGCGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCCTGGAAAGCAAGTTTCCACCAGAACAGTGCAAGTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACCGAACCCTAATTTATTCAACCCAGTCATGCAACATAAGAAAACGGCAGAAAAAGGCACGAAGAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCTTACTTTGTCAAGGGACAGAGAATACTTGGAGGCTACAAGCAAGGGAACGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGCCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTTCATGTGGTAATGGGGGGGATTTGATTTTCTGTGATCGCTGTCCCCGAGCTTTCCATACAGGGTGCCTGCATCTACAGAATGTTCCTGAAGGAGCTTGGTGTTGCCCAAACTGTAGAGATAAAGTAGGTTCCAGTTTGAAGGCTGCTTCCGGAGGTTCTTTGAGTTTTCCAAAACCAATTGTATTTAGGTTGACGCGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCCAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTCGGCTGCCTGCGGGATAGTAGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATTTGGCCCTTCAGAATACAGTTTTGAACGGGGCACAGATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAACACGTTGGAAAAGGTTTATTAGTTGACGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGGAAAAGTCGTTACCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCCATTGTTGCAAAATCAGGTCGTGATCTCATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGGATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTACTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCAGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGATTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGTCGACATTATGA 2529 43.26 MGEEAAGLAAVANEPLGKESASDTELKRDHQCLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSDGVRCQNNTSQNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNDASMSGGKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLNGLINGGGYMCGCSICNFTTILSAYEFEQHAGLKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNMDSFEAWKASFHQNSASIEVENDDVKLPKLSHPIERPNPNLFNPVMQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCASCGNGGDLIFCDRCPRAFHTGCLHLQNVPEGAWCCPNCRDKVGSSLKAASGGSLSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSRLCDLKELPKDKWFCCDECSNIHLALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQRSTL 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71900761 71908784 - Tan0022143.1 Tan08g1981 761873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1981 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Tan08g1981 842 Gene3D - 673 837 - -
Tan08g1981 842 Pfam PHD-finger 492 531 IPR019787 -
Tan08g1981 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 547 IPR013083 -
Tan08g1981 842 Pfam Tify domain binding domain 258 312 IPR032308 -
Tan08g1981 842 Pfam Tify domain binding domain 425 474 IPR032308 -
Tan08g1981 842 MobiDBLite consensus disorder prediction 1 112 - -
Tan08g1981 842 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 726 814 IPR016181 -
Tan08g1981 842 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Tan08g1981 842 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Tan08g1981 842 MobiDBLite consensus disorder prediction 57 112 - -
Tan08g1981 842 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Tan08g1981 842 MobiDBLite consensus disorder prediction 157 188 - -
Tan08g1981 842 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Tan08g1981 842 SUPERFAMILY FYVE/PHD zinc finger 479 533 IPR011011 -
Tan08g1981 842 SMART PHD_3 491 532 IPR001965 -
Tan08g1981 842 SMART PHD_3 570 627 IPR001965 -
Tan08g1981 842 FunFam PHD finger family protein 669 836 - -
Tan08g1981 842 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Tan08g1981 842 FunFam PHD zinc finger protein 569 629 - -
Tan08g1981 842 PANTHER AUTOIMMUNE REGULATOR 27 839 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Tan08g1981 842 MobiDBLite consensus disorder prediction 20 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0359 Tan-Chr5:2652497 Tan08g1981 Tan-Chr8:71900761 2.20E-39 dispersed
Tan05g0360 Tan-Chr5:2652497 Tan08g1981 Tan-Chr8:71900761 2.20E-39 dispersed
Tan06g2523 Tan-Chr6:77838475 Tan08g1981 Tan-Chr8:71900761 1.50E-37 dispersed
Tan08g1823 Tan-Chr8:70210383 Tan08g1981 Tan-Chr8:71900761 8.40E-147 dispersed
Tan08g1981 Tan-Chr8:71900761 Tan05g0189 Tan-Chr5:1509911 1.50E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28229 PF16135 TDBD 1.20E-12 No_clan Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1981 - - - 0.0