Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g1981 ATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTGCAAATGAGCCGCTGGGGAAAGAGAGCGCTTCGGATACCGAATTGAAGCGAGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGTCGTTTCACAATAAGAAGCAGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACTAGTCAGCCAGAAGAACAAGAAAATACCAACCAAGTCGAGCGCGGGGACCTTACATCAGCTTGTTCGGGAAATTCAAGCTCAGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAACAACACGTCTCAAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAATTCAGCAAAAAAAAGGACAACAATGACGCATCCATGTCAGGTGGCAAAGTTCATTCTTATGGAAACTCCGACAAGGACTGTAAACCTGAACCATCATCGGTTGATGATGCTTACACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTTTCCTTCAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTGCCAAACAATTACCCGTCAAATGTGAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTGAAGTATATATCTACGACAAGTGAGATAAAGCTAAATGGTCTTATAAATGGCGGAGGCTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTACGAGTTTGAACAGCATGCTGGTCTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGCGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCATCTGTTAACATGGATTCATTTGAGGCCTGGAAAGCAAGTTTCCACCAGAACAGTGCAAGTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGACCGAACCCTAATTTATTCAACCCAGTCATGCAACATAAGAAAACGGCAGAAAAAGGCACGAAGAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCTTACTTTGTCAAGGGACAGAGAATACTTGGAGGCTACAAGCAAGGGAACGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGCCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTTCATGTGGTAATGGGGGGGATTTGATTTTCTGTGATCGCTGTCCCCGAGCTTTCCATACAGGGTGCCTGCATCTACAGAATGTTCCTGAAGGAGCTTGGTGTTGCCCAAACTGTAGAGATAAAGTAGGTTCCAGTTTGAAGGCTGCTTCCGGAGGTTCTTTGAGTTTTCCAAAACCAATTGTATTTAGGTTGACGCGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCCAAATTTGATGATCGAACTGTACTGTTATGTGATCAATGTGAAAGAGAATTCCATGTCGGCTGCCTGCGGGATAGTAGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATTTGGCCCTTCAGAATACAGTTTTGAACGGGGCACAGATTATTCCAGATTCATTATCAGATTTAATAATCAGAAAACACGTTGGAAAAGGTTTATTAGTTGACGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGGAAAAGTCGTTACCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCCATTGTTGCAAAATCAGGTCGTGATCTCATACCCGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGGATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTACTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCTGCAGCAGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGATTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTGCAGCGGTCGACATTATGA 2529 43.26 MGEEAAGLAAVANEPLGKESASDTELKRDHQCLDEDTEPESFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSDGVRCQNNTSQNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNDASMSGGKVHSYGNSDKDCKPEPSSVDDAYTETSAHSWEGCAESSRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLNGLINGGGYMCGCSICNFTTILSAYEFEQHAGLKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNMDSFEAWKASFHQNSASIEVENDDVKLPKLSHPIERPNPNLFNPVMQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCASCGNGGDLIFCDRCPRAFHTGCLHLQNVPEGAWCCPNCRDKVGSSLKAASGGSLSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSRLCDLKELPKDKWFCCDECSNIHLALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQRSTL 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 71900761 71908784 - Tan0022143.1 Tan08g1981 761873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g1981 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 629 IPR013083 -
Tan08g1981 842 Gene3D - 673 837 - -
Tan08g1981 842 Pfam PHD-finger 492 531 IPR019787 -
Tan08g1981 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 547 IPR013083 -
Tan08g1981 842 Pfam Tify domain binding domain 258 312 IPR032308 -
Tan08g1981 842 Pfam Tify domain binding domain 425 474 IPR032308 -
Tan08g1981 842 MobiDBLite consensus disorder prediction 1 112 - -
Tan08g1981 842 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 726 814 IPR016181 -
Tan08g1981 842 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Tan08g1981 842 ProSitePatterns Zinc finger PHD-type signature. 571 626 IPR019786 -
Tan08g1981 842 MobiDBLite consensus disorder prediction 57 112 - -
Tan08g1981 842 ProSiteProfiles Zinc finger PHD-type profile. 568 629 IPR019787 -
Tan08g1981 842 MobiDBLite consensus disorder prediction 157 188 - -
Tan08g1981 842 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Tan08g1981 842 SUPERFAMILY FYVE/PHD zinc finger 479 533 IPR011011 -
Tan08g1981 842 SMART PHD_3 491 532 IPR001965 -
Tan08g1981 842 SMART PHD_3 570 627 IPR001965 -
Tan08g1981 842 FunFam PHD finger family protein 669 836 - -
Tan08g1981 842 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Tan08g1981 842 FunFam PHD zinc finger protein 569 629 - -
Tan08g1981 842 PANTHER AUTOIMMUNE REGULATOR 27 839 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Tan08g1981 842 MobiDBLite consensus disorder prediction 20 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g1981 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0359 Tan-Chr5:2652497 Tan08g1981 Tan-Chr8:71900761 2.20E-39 dispersed
Tan05g0360 Tan-Chr5:2652497 Tan08g1981 Tan-Chr8:71900761 2.20E-39 dispersed
Tan06g2523 Tan-Chr6:77838475 Tan08g1981 Tan-Chr8:71900761 1.50E-37 dispersed
Tan08g1823 Tan-Chr8:70210383 Tan08g1981 Tan-Chr8:71900761 8.40E-147 dispersed
Tan08g1981 Tan-Chr8:71900761 Tan05g0189 Tan-Chr5:1509911 1.50E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g4335 . 654 1242 PHD Transcription Factor Family AT3G14980 52.1 1.1e-167 588.6
Tan01g4336 . 654 1236 PHD Transcription Factor Family AT3G14980 51.4 7.2e-164 575.9
Tan08g1981 . 18 837 PHD Transcription Factor Family AT3G53680 54.3 2.9e-252 869.0
Tan04g0317 . 439 565 PHD Transcription Factor Family AT3G53680 55.1 6.3e-37 153.7
Tan05g0358 . 316 442 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
Tan05g0359 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
Tan05g0360 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.4e-36 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28229 PF16135 TDBD 1.20E-12 No_clan Tan TR