Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2063 ATGGCGCCTCCGGAAGGGTCCCAGTCCGACATTGATTTGGAGCAGGGGAGTCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCTCAGTTTTATTCGACCAACGGTGGTTCTTACGATGAGTGTAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCATCGGCTTCGGATCGTTCTGTGGAGGTTGAAAACGAAAATGGGATTACTGAAATTAAGGTGCATTTAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATTGAATTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGTCATTCTGTTGCACGAAACATTCTCGGACCAAATGAGGTCGAGTCAACAGAGCAGTCTAATGAATCCAACACCTCCTCAACAACTGCAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTCGCATTTGTTATATCTTGGCTCTTCCACTTCAACGTGCCCTCATAA 693 46.32 MAPPEGSQSDIDLEQGSHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDECRFAFVSQPEVGVVSDSRRVSSASDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNTSSTTAVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS 230
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 72723039 72726469 - Tan0020955.1 Tan08g2063 761955
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2063 230 PANTHER ZINC FINGER, RING-CH-TYPE 35 229 - -
Tan08g2063 230 CDD RING_CH-C4HC3_MARCH 107 159 - -
Tan08g2063 230 MobiDBLite consensus disorder prediction 1 22 - -
Tan08g2063 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 167 IPR013083 -
Tan08g2063 230 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270(InterPro)
Tan08g2063 230 MobiDBLite consensus disorder prediction 169 188 - -
Tan08g2063 230 SUPERFAMILY RING/U-box 104 162 - -
Tan08g2063 230 SMART ringv_2 106 159 IPR011016 GO:0008270(InterPro)
Tan08g2063 230 Pfam RING-variant domain 107 158 IPR011016 GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2063 Tan-Chr8:72723039 Tan08g2306 Tan-Chr8:74412886 5.70E-41 dispersed
Tan11g0240 Tan-Chr11:1928095 Tan08g2063 Tan-Chr8:72723039 5.30E-57 wgd
Tan03g0855 Tan-Chr3:64748740 Tan08g2063 Tan-Chr8:72723039 1.70E-49 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2063 - - - 0.0