Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan08g2063 | ATGGCGCCTCCGGAAGGGTCCCAGTCCGACATTGATTTGGAGCAGGGGAGTCATCGGCGGTCTGTTAGTGGTAGTGAGTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTTATTCTCAGTTTTATTCGACCAACGGTGGTTCTTACGATGAGTGTAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGGGTTGTTTCGGATTCTCGGCGAGTTTCATCGGCTTCGGATCGTTCTGTGGAGGTTGAAAACGAAAATGGGATTACTGAAATTAAGGTGCATTTAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATTGAATTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGTCATTCTGTTGCACGAAACATTCTCGGACCAAATGAGGTCGAGTCAACAGAGCAGTCTAATGAATCCAACACCTCCTCAACAACTGCAGTTGCTGCATCAATTCCCTCATCAGACAGCCAAAGCTTCTGGCGTGGCCATCGGTTTCTGAACTTTCTACTTGCTTGTATGGTTTTCGCATTTGTTATATCTTGGCTCTTCCACTTCAACGTGCCCTCATAA | 693 | 46.32 | MAPPEGSQSDIDLEQGSHRRSVSGSELSADCSVYFSDADEGSCYSQFYSTNGGSYDECRFAFVSQPEVGVVSDSRRVSSASDRSVEVENENGITEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSVARNILGPNEVESTEQSNESNTSSTTAVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 72723039 | 72726469 | - | Tan0020955.1 | Tan08g2063 | 761955 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan08g2063 | 230 | PANTHER | ZINC FINGER, RING-CH-TYPE | 35 | 229 | - | - | |
| Tan08g2063 | 230 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Tan08g2063 | 230 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Tan08g2063 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 167 | IPR013083 | - | |
| Tan08g2063 | 230 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270(InterPro) | |
| Tan08g2063 | 230 | MobiDBLite | consensus disorder prediction | 169 | 188 | - | - | |
| Tan08g2063 | 230 | SUPERFAMILY | RING/U-box | 104 | 162 | - | - | |
| Tan08g2063 | 230 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270(InterPro) | |
| Tan08g2063 | 230 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan08g2063 | Tan-Chr8:72723039 | Tan08g2306 | Tan-Chr8:74412886 | 5.70E-41 | dispersed | |
| Tan11g0240 | Tan-Chr11:1928095 | Tan08g2063 | Tan-Chr8:72723039 | 5.30E-57 | wgd | |
| Tan03g0855 | Tan-Chr3:64748740 | Tan08g2063 | Tan-Chr8:72723039 | 1.70E-49 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan08g2063 | - | - | - | 0.0 |