Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2120 ATGGCTTCTTGTTGCTTTGCAATCCTGAATTGCTGTAGAGGAAATAGCAGCTCCGAGGAGCCGGCAGAAGGGCTTGCTGTTACCAACAATGTGCGCATATTTTCTTATAATTCACTGAGGTCAGCAACTAGTAATTTTCATCCATCAAGCAGAATAGGTGCCGGAGGTTATGGAGTTGTCTACAAAGGGGTTTTAAGGGATGGTACCAATGTTGCAGTCAAATCACTGTCTGCAGAATCAGCTCAGGGAACTCGTGAATTCTTAACCGAGATAAATATGATATCAAATATAAGACATCAAAACCTCGTTGAACTGATTGGTTGTTGCGTTGAAGGCACTCATCGAATTTTGGTGTATGAATACCTAGAGAACAACAGCCTTGCGAGTACTTTGCTTGGTTCAATGAGTAAGCATGCCATTCTGGATTGGCCAAAGAGAGCTAAGATTTGTCTTGGTACAGCTCTTGGTCTTGCATTTCTACATGAGGAAGCTGAACTGTCTGTTGTTCATAGAGATATCAAGGCTAGTAATATACTTCTTGACAGAAATTTTCATCCTAAAATAGGAGACTTTGGGTTGGCTAAACTTTTCCCAGACAACGTTACTCATGTTAGTACTCGAGTGGCCGGAACTGTTGGATATTTGGCCCCTGAGTATGCACTTTTAGGACAGCTGACGAAGAAGGCAGATGTATATAGTTTTGGTGTGCTCATGCTGGAAGTAATTAGTGGAAATAGCAGCAGTAAAGCAGCATTCGGAGAAGAGTTGTCGATTCTCGTGGAATGGGTACATTTCCAAGTGGAACTTGTTGCTCATTCGTTGAATGTGAATTTGCTTTCACGAGTACCACTAAATAGTCACCCTAATGCTTGTAATTAA 879 41.64 MASCCFAILNCCRGNSSSEEPAEGLAVTNNVRIFSYNSLRSATSNFHPSSRIGAGGYGVVYKGVLRDGTNVAVKSLSAESAQGTREFLTEINMISNIRHQNLVELIGCCVEGTHRILVYEYLENNSLASTLLGSMSKHAILDWPKRAKICLGTALGLAFLHEEAELSVVHRDIKASNILLDRNFHPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLMLEVISGNSSSKAAFGEELSILVEWVHFQVELVAHSLNVNLLSRVPLNSHPNACN 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73093997 73097698 - Tan0014347.5 Tan08g2120 762012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2120 292 FunFam Lectin-domain containing receptor kinase A4.3 122 279 - -
Tan08g2120 292 PIRSF ILK 6 262 - -
Tan08g2120 292 ProSiteProfiles Protein kinase domain profile. 46 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g2120 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g2120 292 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524(InterPro)
Tan08g2120 292 Gene3D Transferase(Phosphotransferase) domain 1 122 287 - -
Tan08g2120 292 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Tan08g2120 292 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 20 265 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Tan08g2120 292 FunFam cold-responsive protein kinase 1 16 121 - -
Tan08g2120 292 Pfam Protein kinase domain 47 249 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g2120 292 SUPERFAMILY Protein kinase-like (PK-like) 25 251 IPR011009 -
Tan08g2120 292 SMART serkin_6 46 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2118 Tan-Chr8:73093997 Tan08g2120 Tan-Chr8:73093997 9.60E-94 dispersed
Tan08g2120 Tan-Chr8:73093997 Tan01g0913 Tan-Chr1:8678425 2.00E-75 dispersed
Tan08g2119 Tan-Chr8:73093997 Tan08g2120 Tan-Chr8:73093997 8.90E-148 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67985 PF00069 Pkinase 3.20E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2120 - - - 0.0