Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2132 ATGGATTTCGAACAAGAAACGACGATCTTGCAAAACGGCGCCGTCAAGGACTCGCTCGGGCACGGTCGTCGGACGGCTCACAACCTGTCGTCGTCGTCGCTGCGCAAAAAGTCCGATTTGACCCTCGCTTCCAAGGTTCGTTTCGGTTGTCTCAGGCTATTGCTTGTGAATCTTCAGGAGGTCATTTTGGGGACCAGGATTTGGATTCTTTTTCCGGCGATTCCGTTGGCTGTTTTGGCCGACTCTTTTCACTTCGGAAAACCATGGGTTTTTGTTCTTAGCTTACTGGGCCTTGCTCCACTTGCTGAACGCCTCACCTTTCTGACAGAACAAATCTCTCACTTCACCGGCTCCACAGTTGGTGGATTATTAAATGCGACATGTGGCAATGCGACGGAGCTAATTATAGCAATATTTGCACTTAGCAACAATAAGATTGAATTGGTGAAGTATTCTCTTTTGGGTTCTCTTCTTTCAAACCTTCTTCTTGTTCTTGGAACTTCCCTCTTCATTGGTGGTATCGTCAATCTTAAAAAACAACAAATCTATGACCGAAGACAAGTTGAGACGAACTCGCACATGCTATTGTTGGCACTTTTATGTCATTTGCTTCCAATGTTGTTTCCTTACGTCGGAGAATCAGTGGAGGTGGTCAGAATTGGAGCGCTACGATTATCTAGAGCCAGTAGTATAGTTATGTTGGTAGCTTATGTTGCTTACTTGATCTTTCAGCTTTGGACTCATCGTCAATTATTTGAACCAGATAAGGAAATGGATGAATACGACGACGTTGTGGAAGAAGCTCCAGTGATTGGAATATGGAGCGCAATAGCGTGGTTGGTGGGTATTACCGTTCTTATTGCTTTGTTGTCCGAGTACGTGGTGGCTACAATTGAGGATGCATCAGAAACTTGGGGTTTATCAGTTGCGTTCCTTAGCATAATTTTGCTACCACTGGTTGGAAATGCAACTGAGCATGCAGGAGCTATCATTTTTGCTTATAAGAACAAGTTGGATATAACTTTAGGTGTTACTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTGTGTGTAATTGTTGCTTGGTTTATGGGAATGAATATGGATCTTAATTTCAATATCCTTGAAACTGTCTCCCTTGCTCTTTCAATAATGGCTTCATCATCCATTTTACAGGATGGTTCTTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTATATTGTCATTGCAACTTGTTTCTTCTTAACCAATGATGAGACCACTATCAATAATTCTGGGTTGTCGAGAATCCAACTAAATCAACGGTAG 1323 42.55 MDFEQETTILQNGAVKDSLGHGRRTAHNLSSSSLRKKSDLTLASKVRFGCLRLLLVNLQEVILGTRIWILFPAIPLAVLADSFHFGKPWVFVLSLLGLAPLAERLTFLTEQISHFTGSTVGGLLNATCGNATELIIAIFALSNNKIELVKYSLLGSLLSNLLLVLGTSLFIGGIVNLKKQQIYDRRQVETNSHMLLLALLCHLLPMLFPYVGESVEVVRIGALRLSRASSIVMLVAYVAYLIFQLWTHRQLFEPDKEMDEYDDVVEEAPVIGIWSAIAWLVGITVLIALLSEYVVATIEDASETWGLSVAFLSIILLPLVGNATEHAGAIIFAYKNKLDITLGVTLGSATQIAMFVVPLCVIVAWFMGMNMDLNFNILETVSLALSIMASSSILQDGSSHYMKGLILLLFYIVIATCFFLTNDETTINNSGLSRIQLNQR 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73125304 73145359 - Tan0017075.1 Tan08g2132 762024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2132 440 FunFam Vacuolar cation/proton exchanger 264 420 - -
Tan08g2132 440 NCBIfam calcium/proton exchanger 72 419 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Tan08g2132 440 Pfam Sodium/calcium exchanger protein 276 419 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g2132 440 Pfam Sodium/calcium exchanger protein 88 246 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan08g2132 440 Gene3D - 262 420 IPR044880 -
Tan08g2132 440 Gene3D - 116 260 IPR044880 -
Tan08g2132 440 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 17 424 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1013 Tan-Chr5:8413889 Tan08g2132 Tan-Chr8:73125304 4.00E-63 dispersed
Tan05g1014 Tan-Chr5:8413889 Tan08g2132 Tan-Chr8:73125304 5.90E-81 dispersed
Tan08g2132 Tan-Chr8:73125304 Tan08g2346 Tan-Chr8:74749066 3.70E-121 dispersed
Tan03g0788 Tan-Chr3:64009293 Tan08g2132 Tan-Chr8:73125304 4.20E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2132 K07300 - csv:101213176 638.262