Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2138 ATGGATCTCTATCTCTACTCCGCCATGGAAATGCCCTCCACCACTCCCAAAACCGTCGAGGAAATCTTCAAAGATTACACCGGTCGCCGTGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTGGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCCAAACTTGCCGAACAGAGTTACGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGCGGTGAAAACTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCATGGAAAGTGTGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAGCAATACAAATGCCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 747 46.99 MDLYLYSAMEMPSTTPKTVEEIFKDYTGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73212437 73215000 + Tan0005629.1 Tan08g2138 762030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2138 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Tan08g2138 248 Pfam Alfin 18 143 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan08g2138 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Tan08g2138 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 242 IPR013083 -
Tan08g2138 248 MobiDBLite consensus disorder prediction 149 183 - -
Tan08g2138 248 PANTHER CPG BINDING PROTEIN 15 247 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan08g2138 248 SMART PHD_3 194 242 IPR001965 -
Tan08g2138 248 Pfam PHD-finger 195 241 IPR019787 -
Tan08g2138 248 MobiDBLite consensus disorder prediction 154 178 - -
Tan08g2138 248 FunFam PHD finger alfin-like protein 187 243 - -
Tan08g2138 248 SUPERFAMILY FYVE/PHD zinc finger 183 246 IPR011011 -
Tan08g2138 248 CDD PHD_AL_plant 194 244 IPR044104 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1306 Tan-Chr4:13043317 Tan08g2138 Tan-Chr8:73212437 7.40E-110 dispersed
Tan06g0145 Tan-Chr6:1339577 Tan08g2138 Tan-Chr8:73212437 2.00E-87 dispersed
Tan08g0036 Tan-Chr8:494043 Tan08g2138 Tan-Chr8:73212437 7.80E-84 dispersed
Tan08g2138 Tan-Chr8:73212437 Tan09g1107 Tan-Chr9:63379831 6.80E-40 dispersed
Tan08g2138 Tan-Chr8:73212437 Tan08g2139 Tan-Chr8:73212437 3.40E-140 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28239 PF12165 Alfin 7.20E-67 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2138 K26274 - csv:101211970 474.937