Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2139 ATGGAAATGCCCTCCACCACTCCCAAAACCGTCGAGGAAATCTTCAAAGATTACACCGGTCGCCGTGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTGGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCCAAACTTGCCGAACAGAGTTACGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGCGGTGAAAACTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCATGGAAAGTGTGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAGCAATACAAATGCCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 723 46.89 MEMPSTTPKTVEEIFKDYTGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73212437 73215000 + Tan0005629.2 Tan08g2139 762031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2139 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Tan08g2139 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Tan08g2139 240 FunFam PHD finger alfin-like protein 179 235 - -
Tan08g2139 240 MobiDBLite consensus disorder prediction 141 175 - -
Tan08g2139 240 Pfam PHD-finger 187 233 IPR019787 -
Tan08g2139 240 SMART PHD_3 186 234 IPR001965 -
Tan08g2139 240 PANTHER CPG BINDING PROTEIN 7 239 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan08g2139 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Tan08g2139 240 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan08g2139 240 MobiDBLite consensus disorder prediction 146 170 - -
Tan08g2139 240 CDD PHD_AL_plant 186 236 IPR044104 -
Tan08g2139 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2139 Tan-Chr8:73212437 Tan09g1107 Tan-Chr9:63379831 6.60E-40 dispersed
Tan08g2138 Tan-Chr8:73212437 Tan08g2139 Tan-Chr8:73212437 3.40E-140 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28240 PF12165 Alfin 6.60E-67 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2139 K26274 - csv:101211970 474.937