Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g2139 | ATGGAAATGCCCTCCACCACTCCCAAAACCGTCGAGGAAATCTTCAAAGATTACACCGGTCGCCGTGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTGGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCCAAACTTGCCGAACAGAGTTACGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGCGGTGAAAACTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCATGGAAAGTGTGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAGCAATACAAATGCCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG | 723 | 46.89 | MEMPSTTPKTVEEIFKDYTGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 73212437 | 73215000 | + | Tan0005629.2 | Tan08g2139 | 762031 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g2139 | 240 | ProSiteProfiles | Zinc finger PHD-type profile. | 184 | 236 | IPR019787 | - | |
Tan08g2139 | 240 | SUPERFAMILY | FYVE/PHD zinc finger | 175 | 238 | IPR011011 | - | |
Tan08g2139 | 240 | FunFam | PHD finger alfin-like protein | 179 | 235 | - | - | |
Tan08g2139 | 240 | MobiDBLite | consensus disorder prediction | 141 | 175 | - | - | |
Tan08g2139 | 240 | Pfam | PHD-finger | 187 | 233 | IPR019787 | - | |
Tan08g2139 | 240 | SMART | PHD_3 | 186 | 234 | IPR001965 | - | |
Tan08g2139 | 240 | PANTHER | CPG BINDING PROTEIN | 7 | 239 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Tan08g2139 | 240 | ProSitePatterns | Zinc finger PHD-type signature. | 187 | 233 | IPR019786 | - | |
Tan08g2139 | 240 | Pfam | Alfin | 10 | 135 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Tan08g2139 | 240 | MobiDBLite | consensus disorder prediction | 146 | 170 | - | - | |
Tan08g2139 | 240 | CDD | PHD_AL_plant | 186 | 236 | IPR044104 | - | |
Tan08g2139 | 240 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 234 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g2139 | Tan-Chr8:73212437 | Tan09g1107 | Tan-Chr9:63379831 | 6.60E-40 | dispersed | |
Tan08g2138 | Tan-Chr8:73212437 | Tan08g2139 | Tan-Chr8:73212437 | 3.40E-140 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28240 | PF12165 | Alfin | 6.60E-67 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g2139 | K26274 | - | csv:101211970 | 474.937 |