Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2139 ATGGAAATGCCCTCCACCACTCCCAAAACCGTCGAGGAAATCTTCAAAGATTACACCGGTCGCCGTGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTATATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGCATGAACAGAAAAGATTGGCTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTGGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCCAAACTTGCCGAACAGAGTTACGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGCGGTGAAAACTACAGTGCAGATGAGTTCTGGATTGGCTGTGACATATGCGAAAGGTGGTACCATGGAAAGTGTGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAGCAATACAAATGCCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 723 46.89 MEMPSTTPKTVEEIFKDYTGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73212437 73215000 + Tan0005629.2 Tan08g2139 762031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2139 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Tan08g2139 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Tan08g2139 240 FunFam PHD finger alfin-like protein 179 235 - -
Tan08g2139 240 MobiDBLite consensus disorder prediction 141 175 - -
Tan08g2139 240 Pfam PHD-finger 187 233 IPR019787 -
Tan08g2139 240 SMART PHD_3 186 234 IPR001965 -
Tan08g2139 240 PANTHER CPG BINDING PROTEIN 7 239 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Tan08g2139 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Tan08g2139 240 Pfam Alfin 10 135 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Tan08g2139 240 MobiDBLite consensus disorder prediction 146 170 - -
Tan08g2139 240 CDD PHD_AL_plant 186 236 IPR044104 -
Tan08g2139 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2139 K26274 - - csv:101211970 474.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2139 Tan-Chr8:73212437 Tan09g1107 Tan-Chr9:63379831 6.60E-40 dispersed
Tan08g2138 Tan-Chr8:73212437 Tan08g2139 Tan-Chr8:73212437 3.40E-140 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan01g1497 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.3 6.1e-113 404.4
Tan01g1498 . 1 253 Alfin-like Transcription Factor Family AT1G14510 83.0 8.9e-112 400.6
Tan08g0036 . 9 249 Alfin-like Transcription Factor Family AT1G14510 69.8 4.4e-95 345.1
Tan02g1591 . 9 251 Alfin-like Transcription Factor Family AT1G14510 69.5 1.7e-94 343.2
Tan06g0145 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 3.5e-92 335.5
Tan02g1592 . 9 231 Alfin-like Transcription Factor Family AT1G14510 66.9 8.6e-91 330.9
Tan04g1306 . 62 292 Alfin-like Transcription Factor Family AT1G14510 60.2 1.7e-78 290.0
Tan08g2138 . 16 245 Alfin-like Transcription Factor Family AT1G14510 60.8 1.7e-78 290.0
Tan08g2139 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.7e-78 290.0
Tan08g0036 . 1 251 Alfin-like Transcription Factor Family AT5G26210 74.8 4.9e-110 394.8
Tan02g1591 . 1 253 Alfin-like Transcription Factor Family AT5G26210 73.6 4.6e-108 388.3
Tan02g1592 . 1 233 Alfin-like Transcription Factor Family AT5G26210 70.1 2.9e-102 369.0
Tan06g0145 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 5.6e-98 354.8
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT5G26210 73.3 7.1e-93 337.8
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT5G26210 73.0 1.2e-92 337.0
Tan04g1306 . 61 294 Alfin-like Transcription Factor Family AT5G26210 59.1 3.7e-81 298.9
Tan08g2138 . 16 247 Alfin-like Transcription Factor Family AT5G26210 58.9 4.1e-80 295.4
Tan08g2139 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 4.1e-80 295.4
Tan08g0036 . 1 251 Alfin-like Transcription Factor Family AT3G42790 71.0 1.8e-101 366.3
Tan02g1592 . 1 233 Alfin-like Transcription Factor Family AT3G42790 70.3 1.3e-99 360.1
Tan02g1591 . 1 253 Alfin-like Transcription Factor Family AT3G42790 69.8 1.7e-99 359.8
Tan06g0145 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 5.2e-96 348.2
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT3G42790 70.0 2.7e-89 325.9
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT3G42790 70.3 6.1e-89 324.7
Tan04g1306 . 61 294 Alfin-like Transcription Factor Family AT3G42790 60.7 7.3e-82 301.2
Tan08g2138 . 16 247 Alfin-like Transcription Factor Family AT3G42790 58.8 5.7e-79 291.6
Tan08g2139 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 5.7e-79 291.6
Tan04g1306 . 55 294 Alfin-like Transcription Factor Family AT5G05610 77.2 1.1e-111 400.2
Tan08g2138 . 9 248 Alfin-like Transcription Factor Family AT5G05610 75.9 2.6e-108 389.0
Tan08g2139 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.9 2.6e-108 389.0
Tan02g1591 . 8 253 Alfin-like Transcription Factor Family AT5G05610 66.3 1.4e-93 340.1
Tan06g0145 . 10 250 Alfin-like Transcription Factor Family AT5G05610 66.1 4.4e-92 335.1
Tan08g0036 . 8 251 Alfin-like Transcription Factor Family AT5G05610 63.7 2.4e-90 329.3
Tan02g1592 . 8 233 Alfin-like Transcription Factor Family AT5G05610 64.2 5.9e-89 324.7
Tan01g1497 . 9 254 Alfin-like Transcription Factor Family AT5G05610 61.4 4.8e-83 305.1
Tan01g1498 . 9 255 Alfin-like Transcription Factor Family AT5G05610 61.1 8.3e-83 304.3
Tan04g1306 . 97 294 Alfin-like Transcription Factor Family AT3G11200 80.1 4.1e-95 345.1
Tan08g2138 . 51 248 Alfin-like Transcription Factor Family AT3G11200 77.7 9.7e-89 323.9
Tan08g2139 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.7 9.7e-89 323.9
Tan02g1591 . 44 253 Alfin-like Transcription Factor Family AT3G11200 65.9 1.9e-76 283.1
Tan06g0145 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 5.2e-74 275.0
Tan08g0036 . 44 251 Alfin-like Transcription Factor Family AT3G11200 64.4 5.2e-74 275.0
Tan02g1592 . 44 233 Alfin-like Transcription Factor Family AT3G11200 63.1 5.7e-73 271.6
Tan01g1497 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 8.6e-69 257.7
Tan01g1498 . 44 255 Alfin-like Transcription Factor Family AT3G11200 61.8 7.3e-68 254.6
Tan01g1497 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.2e-77 285.4
Tan01g1498 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.2e-77 285.4
Tan08g0036 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 9.7e-66 247.7
Tan02g1591 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 1.4e-64 243.8
Tan02g1592 . 1 145 Alfin-like Transcription Factor Family AT2G02470 80.0 1.5e-63 240.4
Tan06g0145 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 1.7e-62 236.9
Tan04g1306 . 62 209 Alfin-like Transcription Factor Family AT2G02470 68.9 2.9e-54 209.5
Tan08g2138 . 16 175 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Tan08g2139 . 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Tan02g1591 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.2 3.0e-72 268.9
Tan08g0036 . 1 164 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-72 268.1
Tan06g0145 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.8 1.6e-68 256.5
Tan02g1592 . 1 149 Alfin-like Transcription Factor Family AT5G20510 79.3 2.0e-68 256.1
Tan01g1498 . 3 168 Alfin-like Transcription Factor Family AT5G20510 70.2 2.3e-64 242.7
Tan01g1497 . 3 172 Alfin-like Transcription Factor Family AT5G20510 68.6 4.0e-64 241.9
Tan04g1306 . 61 211 Alfin-like Transcription Factor Family AT5G20510 63.7 2.4e-53 206.1
Tan08g2138 . 15 165 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-51 200.3
Tan08g2139 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-51 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28240 PF12165 Alfin 6.60E-67 No_clan Tan TF