Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2170 ATGTCTGTGTGTAAAGGAAAGGAAGGGCAACAGAAGCTCTTAATGGTGATGTTAGTGGGCGCACCAGGAAGCGGCAAATCCACCTTCTGCGAACTCGTAATGGGTTCTTCTTCTCGCCCGTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCCAGTGCATTGAATGATGGAAAGAGTGTATTTGTGGACAGGTGCAATCTTGAAACAGAGCAGCGTGCAGATTTTGTGAAATTAGGCGGCCCTCGAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCTCAGCTTTGTATTTCCCGTTCGGTTAAGCGGACTGGTCATGAAGGGAATTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAGGAAAGAATTGCCCAAGCTAAATGAAGGGTTCTCTCGTATAACGTTTTGTCACAATGAGACTGACGTTCAATCCGCTATAGATATGTACAAATTGCTTGGTTTACATGATGTACTTTCGGATGGATGTTTTGGACAGAAGAATCCAGACAAGAAAGTACAACTTGGCATAATGAAGTTCTTAAAGAAAGCAGAAAATCCTTCTAAGACGTGCTCTAGTGCCAATACCGTTAAGGATTCTCCAATTTCTCAAACTACCCAGGAAAAGATCAACTCTTGTGATAAAAAGGAAGAGTCTGCCTTCACAGTGTTGAGCAGTGTCAATAAAGAGTCAACGAAAGGTGAGAATCCAATTCCAGGCGTTAGATCCTTAGAAGACAATATTTCTCAAAGTGATACTCCAACTCTTGCATTTCCATCTATTTCGACATCGGATTTCAAGTTTAGCCATGAAAAGGCTGCAGAAATTATCGTTGAGAAGGTTGAGGAATTCATGAGTAAGCTTGGAAATGCCAGGCTTGTGTTGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGCTAAAGCTAAAGCAGCCAAGAAAAATATTAGCTCCGCCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAGTTCAGAAGGTGGATTGCGCTGCAATGTAATAGCCAATGCTGCAAACTGGCGACTGAAACCAGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGGTCTGGAAGTGGCAACTAAACAACAAGCAAACTCCCTTCGACCTGGCAACGCCGTGGCCGTTCAATTGCCTTCAACTTCTCCTCTGTTTAATAGAGAAGGAGTAACTCATGTCATACATGTTCTAGGACCCAACATGAATCCACAAAGGCCAAATTATCTCAACAATGACTACGATGAAGGTTGCAAGCTTCTTCGTGATGCTTACTCTTCCCTATTTCAAGGCTTTATTTCGATAGTAGAAGACCAATTTAAGTCGGCAAAGGGAATTCACGAACGCCTTGGCTCGGCACCTTCAGAACCACAAAGGCACTCTGAGAACACGCATCGCAAGTTTAAGAGAGAGGATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAGGATTCAGCTGAAGCATTAAACCAAAACAGCAATAAGACTGTCCAGAAAATGAGTAAGCACTGGGGCTCGTGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAGACATGGTGATACTGTACTGGAGACATCAGATGATGTTGTAGTATTGAATGATATTTATCCAAAAGCACGCCAGCATCTTCTGATAGTGGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACATAAAAATCACCTTCCATTGTTGAGGACGATGCACGCCGTGGGTTTGAAGTGGATTGATAAGTTCTTTCATGAAGATGCATCATTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCATCTACATGTTATAAGCCAGGATTTCAACTCCAGTCATCTAAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCTGTCGACGTTATGGACGAAGTCAGTAGCCATGGAAAGGTGAGCATCAATGACGATGAGAGCTTGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTGAAAGCACATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACGCTGCTTGAGGGCGGTCGTTTAGTAACCAAGTTACAATGTTGTTATGAATGGAGAAAAAGATTTGAAAGACCTCCCCGACTTTTCAAAGTTGGTGATTTGAAAGACTTTTGTTTATGA 2292 43.28 MSVCKGKEGQQKLLMVMLVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLETEQRADFVKLGGPRVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQRKELPKLNEGFSRITFCHNETDVQSAIDMYKLLGLHDVLSDGCFGQKNPDKKVQLGIMKFLKKAENPSKTCSSANTVKDSPISQTTQEKINSCDKKEESAFTVLSSVNKESTKGENPIPGVRSLEDNISQSDTPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMSKLGNARLVLVDLSHGSKILSLAKAKAAKKNISSAKFFTFVGDITKLSSEGGLRCNVIANAANWRLKPGGGGVNAAIFSAAGPGLEVATKQQANSLRPGNAVAVQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRDAYSSLFQGFISIVEDQFKSAKGIHERLGSAPSEPQRHSENTHRKFKREDLQNPERSKKWKGSQDSAEALNQNSNKTVQKMSKHWGSWAQALYNTAMHPERHGDTVLETSDDVVVLNDIYPKARQHLLIVARYEGLDQLADVHKNHLPLLRTMHAVGLKWIDKFFHEDASLVFRLGYHSAPSMRQLHLHVISQDFNSSHLKNKKHWNSFNTDFFRDSVDVMDEVSSHGKVSINDDESLMSMELRCNRCRSAHPNLPKLKAHISKCQAPFPSTLLEGGRLVTKLQCCYEWRKRFERPPRLFKVGDLKDFCL 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73480803 73492725 - Tan0002083.8 Tan08g2170 762062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2170 763 ProSitePatterns HIT domain signature. 627 645 IPR019808 -
Tan08g2170 763 FunFam Transcription factor bHLH140 321 468 - -
Tan08g2170 763 Pfam C2HE / C2H2 / C2HC zinc-binding finger 663 717 IPR032566 -
Tan08g2170 763 MobiDBLite consensus disorder prediction 484 516 - -
Tan08g2170 763 FunFam Transcription factor bHLH140 3 171 - -
Tan08g2170 763 ProSiteProfiles HIT domain profile. 545 653 IPR011146 GO:0003824(InterPro)
Tan08g2170 763 SUPERFAMILY Macro domain-like 324 461 IPR043472 -
Tan08g2170 763 PANTHER APRATAXIN-RELATED 77 734 - GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER)
Tan08g2170 763 ProSiteProfiles Macro domain profile. 328 549 IPR002589 -
Tan08g2170 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 160 IPR027417 -
Tan08g2170 763 SUPERFAMILY Macro domain-like 267 310 IPR043472 -
Tan08g2170 763 Gene3D - 540 721 IPR036265 -
Tan08g2170 763 MobiDBLite consensus disorder prediction 479 524 - -
Tan08g2170 763 Gene3D Leucine Aminopeptidase, subunit E, domain 1 226 317 IPR043472 -
Tan08g2170 763 FunFam aprataxin isoform X2 539 719 - -
Tan08g2170 763 Pfam Macro domain 364 447 IPR002589 -
Tan08g2170 763 Gene3D Leucine Aminopeptidase, subunit E, domain 1 318 467 IPR043472 -
Tan08g2170 763 Gene3D - 5 171 IPR027417 -
Tan08g2170 763 Pfam Scavenger mRNA decapping enzyme C-term binding 546 658 - -
Tan08g2170 763 SUPERFAMILY HIT-like 528 702 IPR036265 -
Tan08g2170 763 SMART YBR022w_8 340 550 IPR002589 -
Tan08g2170 763 Pfam AAA domain 15 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2166 Tan-Chr8:73480803 Tan08g2170 Tan-Chr8:73480803 0.00E+00 dispersed
Tan08g2170 Tan-Chr8:73480803 Tan08g2174 Tan-Chr8:73488930 0.00E+00 dispersed
Tan08g2169 Tan-Chr8:73480803 Tan08g2170 Tan-Chr8:73480803 0.00E+00 tandem
Tan08g2170 Tan-Chr8:73480803 Tan08g2171 Tan-Chr8:73486770 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2170 K10863 - csv:101216867 1236.48