Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g2172 | ATGGACATGGATATCGACGAAAATTCCACAGCTAAAGGAAAGGAAGGGCAACAGAAGCTCTTAATGGTGATGTTAGTGGGCGCACCAGGAAGCGGCAAATCCACCTTCTGCGAACTCGTAATGGGTTCTTCTTCTCGCCCGTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCCAGTGCATTGAATGATGGAAAGAGTGTATTTGTGGACAGGTGCAATCTTGAAACAGAGCAGCGTGCAGATTTTGTGAAATTAGGCGGCCCTCGAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCTCAGCTTTGTATTTCCCGTTCGGTTAAGCGGACTGGTCATGAAGGGAATTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAGGAAAGAATTGCCCAAGCTAAATGAAGGGTTCTCTCGTATAACGTTTTGTCACAATGAGACTGACGTTCAATCCGCTATAGATATGTACAAATTGCTTGGTTTACATGATGTACTTTCGGATGGATGTTTTGGACAGAAGAATCCAGACAAGAAAGTACAACTTGGCATAATGAAGTTCTTAAAGAAAGCAGAAAATCCTTCTAAGACGTGCTCTAGTGCCAATACCGTTAAGGATTCTCCAATTTCTCAAACTACCCAGGAAAAGATCAACTCTTGTGATAAAAAGGAAGAGTCTGCCTTCACAGTGTTGAGCAGTGTCAATAAAGAGTCAACGAAAGGTGAGAATCCAATTCCAGGCGTTAGATCCTTAGAAGACAATATTTCTCAAAGTGATACTCCAACTCTTGCATTTCCATCTATTTCGACATCGGATTTCAAGTTTAGCCATGAAAAGGCTGCAGAAATTATCGTTGAGAAGGTTGAGGAATTCATGAGTAAGCTTGGAAATGCCAGGCTTGTGTTGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGCTAAAGCTAAAGCAGCCAAGAAAAATATTAGCTCCGCCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAGTTCAGAAGGTGGATTGCGCTGCAATGTAATAGCCAATGCTGCAAACTGGCGACTGAAACCAGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGGTCTGGAAGTGGCAACTAAACAACAAGCAAACTCCCTTCGACCTGGCAACGCCGTGGCCGTTCAATTGCCTTCAACTTCTCCTCTGTTTAATAGAGAAGGAGTAACTCATGTCATACATGTTCTAGGACCCAACATGAATCCACAAAGGCCAAATTATCTCAACAATGACTACGATGAAGGTTGCAAGCTTCTTCGTGATGCTTACTCTTCCCTATTTCAAGGCTTTATTTCGATAGTAGAAGACCAATTTAAGTCGGCAAAGGGAATTCACGAACGCCTTGGCTCGGCACCTTCAGAACCACAAAGGCACTCTGAGAACACGCATCGCAAGTTTAAGAGAGAGGATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAGGATTCAGCTGAAGCATTAAACCAAAACAGCAATAAGACTGTCCAGAAAATGAGTAAGCACTGGGGCTCGTGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAGACATGGTGATACTGTACTGGAGACATCAGATGATGTTGTAGTATTGAATGATATTTATCCAAAAGCACGCCAGCATCTTCTGATAGTGGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACATAAAAATCACCTTCCATTGTTGAGGACGATGCACGCCGTGGGTTTGAAGTGGATTGATAAGTTCTTTCATGAAGATGCATCATTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCATCTACATGTTATAAGCCAGGATTTCAACTCCAGTCATCTAAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCTGTCGACGTTATGGACGAAGTCAGTAGCCATGGAAAGGTGAGCATCAATGACGATGAGAGCTTGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTGAAAGCACATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACGCTGCTTGAGGGCGGTCGTTTAGTAACCAACGTAAATATGGATTCCAATGTAGAGGGAGGGACAACTAGCTCGAAGGAGACTATAAAAAATAAAGATGTCGATCTTGATCTAAAAGCTTCTGAGAATCCAAGTAAGAAGCAACGTAAGAACCCCAAACAATCAATGGTGTGGGATCATTTTGAGCGGTTAGAAGGTGATCCTAATGATCCTTATGCTAAGTGTAAATATTGTGGAGCTACTTATGCATGTCATTCTAAACGTAATGGTACTGGGAGTATGAAAAATCACTTAGACAATTGTAAGAAATATCCTTATCAAAAGAAGAGAGATCCAACCCAAAAGACATTAGCTTTCAAACCTATAGAAACTCAAGCTACTGAGGGTGGGGAATGCCAAGTTGTATGTGAGTCATTTGATTTGCAGAATTGTCGGGAAGTTTTAGCTTAA | 2643 | 42.72 | MDMDIDENSTAKGKEGQQKLLMVMLVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLETEQRADFVKLGGPRVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQRKELPKLNEGFSRITFCHNETDVQSAIDMYKLLGLHDVLSDGCFGQKNPDKKVQLGIMKFLKKAENPSKTCSSANTVKDSPISQTTQEKINSCDKKEESAFTVLSSVNKESTKGENPIPGVRSLEDNISQSDTPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMSKLGNARLVLVDLSHGSKILSLAKAKAAKKNISSAKFFTFVGDITKLSSEGGLRCNVIANAANWRLKPGGGGVNAAIFSAAGPGLEVATKQQANSLRPGNAVAVQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRDAYSSLFQGFISIVEDQFKSAKGIHERLGSAPSEPQRHSENTHRKFKREDLQNPERSKKWKGSQDSAEALNQNSNKTVQKMSKHWGSWAQALYNTAMHPERHGDTVLETSDDVVVLNDIYPKARQHLLIVARYEGLDQLADVHKNHLPLLRTMHAVGLKWIDKFFHEDASLVFRLGYHSAPSMRQLHLHVISQDFNSSHLKNKKHWNSFNTDFFRDSVDVMDEVSSHGKVSINDDESLMSMELRCNRCRSAHPNLPKLKAHISKCQAPFPSTLLEGGRLVTNVNMDSNVEGGTTSSKETIKNKDVDLDLKASENPSKKQRKNPKQSMVWDHFERLEGDPNDPYAKCKYCGATYACHSKRNGTGSMKNHLDNCKKYPYQKKRDPTQKTLAFKPIETQATEGGECQVVCESFDLQNCREVLA | 880 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 73486770 | 73492725 | - | Tan0002083.5 | Tan08g2172 | 762064 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g2172 | 880 | MobiDBLite | consensus disorder prediction | 486 | 531 | - | - | |
Tan08g2172 | 880 | SUPERFAMILY | beta-beta-alpha zinc fingers | 786 | 840 | IPR036236 | - | |
Tan08g2172 | 880 | SMART | bed5 | 783 | 835 | - | - | |
Tan08g2172 | 880 | FunFam | Transcription factor bHLH140 | 8 | 178 | - | - | |
Tan08g2172 | 880 | SMART | YBR022w_8 | 347 | 557 | IPR002589 | - | |
Tan08g2172 | 880 | Pfam | Macro domain | 371 | 454 | IPR002589 | - | |
Tan08g2172 | 880 | Pfam | C2HE / C2H2 / C2HC zinc-binding finger | 670 | 724 | IPR032566 | - | |
Tan08g2172 | 880 | FunFam | Transcription factor bHLH140 | 328 | 475 | - | - | |
Tan08g2172 | 880 | ProSiteProfiles | Zinc finger BED-type profile. | 783 | 839 | IPR003656 | GO:0003677(InterPro) | |
Tan08g2172 | 880 | MobiDBLite | consensus disorder prediction | 491 | 523 | - | - | |
Tan08g2172 | 880 | MobiDBLite | consensus disorder prediction | 745 | 787 | - | - | |
Tan08g2172 | 880 | SUPERFAMILY | Macro domain-like | 331 | 468 | IPR043472 | - | |
Tan08g2172 | 880 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 265 | 340 | IPR043472 | - | |
Tan08g2172 | 880 | SUPERFAMILY | HIT-like | 535 | 709 | IPR036265 | - | |
Tan08g2172 | 880 | Gene3D | - | 547 | 728 | IPR036265 | - | |
Tan08g2172 | 880 | Pfam | BED zinc finger | 786 | 830 | IPR003656 | GO:0003677(InterPro) | |
Tan08g2172 | 880 | MobiDBLite | consensus disorder prediction | 757 | 787 | - | - | |
Tan08g2172 | 880 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 341 | 480 | IPR043472 | - | |
Tan08g2172 | 880 | ProSitePatterns | HIT domain signature. | 634 | 652 | IPR019808 | - | |
Tan08g2172 | 880 | Gene3D | - | 4 | 178 | IPR027417 | - | |
Tan08g2172 | 880 | ProSiteProfiles | HIT domain profile. | 552 | 660 | IPR011146 | GO:0003824(InterPro) | |
Tan08g2172 | 880 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 22 | 167 | IPR027417 | - | |
Tan08g2172 | 880 | Pfam | Scavenger mRNA decapping enzyme C-term binding | 553 | 665 | - | - | |
Tan08g2172 | 880 | Pfam | AAA domain | 22 | 150 | - | - | |
Tan08g2172 | 880 | SUPERFAMILY | Macro domain-like | 274 | 317 | IPR043472 | - | |
Tan08g2172 | 880 | PANTHER | APRATAXIN-RELATED | 84 | 743 | - | GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER) | |
Tan08g2172 | 880 | ProSiteProfiles | Macro domain profile. | 335 | 556 | IPR002589 | - | |
Tan08g2172 | 880 | FunFam | aprataxin isoform X2 | 546 | 726 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g2168 | Tan-Chr8:73480803 | Tan08g2172 | Tan-Chr8:73486770 | 0.00E+00 | dispersed | |
Tan08g2169 | Tan-Chr8:73480803 | Tan08g2172 | Tan-Chr8:73486770 | 0.00E+00 | dispersed | |
Tan08g2172 | Tan-Chr8:73486770 | Tan08g2174 | Tan-Chr8:73488930 | 0.00E+00 | dispersed | |
Tan08g2171 | Tan-Chr8:73486770 | Tan08g2172 | Tan-Chr8:73486770 | 0.00E+00 | tandem | |
Tan08g2172 | Tan-Chr8:73486770 | Tan08g2173 | Tan-Chr8:73488930 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g2172 | K10863 | - | csv:101216867 | 1253.43 |