Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2172 ATGGACATGGATATCGACGAAAATTCCACAGCTAAAGGAAAGGAAGGGCAACAGAAGCTCTTAATGGTGATGTTAGTGGGCGCACCAGGAAGCGGCAAATCCACCTTCTGCGAACTCGTAATGGGTTCTTCTTCTCGCCCGTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCCAGTGCATTGAATGATGGAAAGAGTGTATTTGTGGACAGGTGCAATCTTGAAACAGAGCAGCGTGCAGATTTTGTGAAATTAGGCGGCCCTCGAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCTCAGCTTTGTATTTCCCGTTCGGTTAAGCGGACTGGTCATGAAGGGAATTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAGGAAAGAATTGCCCAAGCTAAATGAAGGGTTCTCTCGTATAACGTTTTGTCACAATGAGACTGACGTTCAATCCGCTATAGATATGTACAAATTGCTTGGTTTACATGATGTACTTTCGGATGGATGTTTTGGACAGAAGAATCCAGACAAGAAAGTACAACTTGGCATAATGAAGTTCTTAAAGAAAGCAGAAAATCCTTCTAAGACGTGCTCTAGTGCCAATACCGTTAAGGATTCTCCAATTTCTCAAACTACCCAGGAAAAGATCAACTCTTGTGATAAAAAGGAAGAGTCTGCCTTCACAGTGTTGAGCAGTGTCAATAAAGAGTCAACGAAAGGTGAGAATCCAATTCCAGGCGTTAGATCCTTAGAAGACAATATTTCTCAAAGTGATACTCCAACTCTTGCATTTCCATCTATTTCGACATCGGATTTCAAGTTTAGCCATGAAAAGGCTGCAGAAATTATCGTTGAGAAGGTTGAGGAATTCATGAGTAAGCTTGGAAATGCCAGGCTTGTGTTGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGCTAAAGCTAAAGCAGCCAAGAAAAATATTAGCTCCGCCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAGTTCAGAAGGTGGATTGCGCTGCAATGTAATAGCCAATGCTGCAAACTGGCGACTGAAACCAGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGGTCTGGAAGTGGCAACTAAACAACAAGCAAACTCCCTTCGACCTGGCAACGCCGTGGCCGTTCAATTGCCTTCAACTTCTCCTCTGTTTAATAGAGAAGGAGTAACTCATGTCATACATGTTCTAGGACCCAACATGAATCCACAAAGGCCAAATTATCTCAACAATGACTACGATGAAGGTTGCAAGCTTCTTCGTGATGCTTACTCTTCCCTATTTCAAGGCTTTATTTCGATAGTAGAAGACCAATTTAAGTCGGCAAAGGGAATTCACGAACGCCTTGGCTCGGCACCTTCAGAACCACAAAGGCACTCTGAGAACACGCATCGCAAGTTTAAGAGAGAGGATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAGGATTCAGCTGAAGCATTAAACCAAAACAGCAATAAGACTGTCCAGAAAATGAGTAAGCACTGGGGCTCGTGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAGACATGGTGATACTGTACTGGAGACATCAGATGATGTTGTAGTATTGAATGATATTTATCCAAAAGCACGCCAGCATCTTCTGATAGTGGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACATAAAAATCACCTTCCATTGTTGAGGACGATGCACGCCGTGGGTTTGAAGTGGATTGATAAGTTCTTTCATGAAGATGCATCATTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCATCTACATGTTATAAGCCAGGATTTCAACTCCAGTCATCTAAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCTGTCGACGTTATGGACGAAGTCAGTAGCCATGGAAAGGTGAGCATCAATGACGATGAGAGCTTGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTGAAAGCACATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACGCTGCTTGAGGGCGGTCGTTTAGTAACCAACGTAAATATGGATTCCAATGTAGAGGGAGGGACAACTAGCTCGAAGGAGACTATAAAAAATAAAGATGTCGATCTTGATCTAAAAGCTTCTGAGAATCCAAGTAAGAAGCAACGTAAGAACCCCAAACAATCAATGGTGTGGGATCATTTTGAGCGGTTAGAAGGTGATCCTAATGATCCTTATGCTAAGTGTAAATATTGTGGAGCTACTTATGCATGTCATTCTAAACGTAATGGTACTGGGAGTATGAAAAATCACTTAGACAATTGTAAGAAATATCCTTATCAAAAGAAGAGAGATCCAACCCAAAAGACATTAGCTTTCAAACCTATAGAAACTCAAGCTACTGAGGGTGGGGAATGCCAAGTTGTATGTGAGTCATTTGATTTGCAGAATTGTCGGGAAGTTTTAGCTTAA 2643 42.72 MDMDIDENSTAKGKEGQQKLLMVMLVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLETEQRADFVKLGGPRVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQRKELPKLNEGFSRITFCHNETDVQSAIDMYKLLGLHDVLSDGCFGQKNPDKKVQLGIMKFLKKAENPSKTCSSANTVKDSPISQTTQEKINSCDKKEESAFTVLSSVNKESTKGENPIPGVRSLEDNISQSDTPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMSKLGNARLVLVDLSHGSKILSLAKAKAAKKNISSAKFFTFVGDITKLSSEGGLRCNVIANAANWRLKPGGGGVNAAIFSAAGPGLEVATKQQANSLRPGNAVAVQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRDAYSSLFQGFISIVEDQFKSAKGIHERLGSAPSEPQRHSENTHRKFKREDLQNPERSKKWKGSQDSAEALNQNSNKTVQKMSKHWGSWAQALYNTAMHPERHGDTVLETSDDVVVLNDIYPKARQHLLIVARYEGLDQLADVHKNHLPLLRTMHAVGLKWIDKFFHEDASLVFRLGYHSAPSMRQLHLHVISQDFNSSHLKNKKHWNSFNTDFFRDSVDVMDEVSSHGKVSINDDESLMSMELRCNRCRSAHPNLPKLKAHISKCQAPFPSTLLEGGRLVTNVNMDSNVEGGTTSSKETIKNKDVDLDLKASENPSKKQRKNPKQSMVWDHFERLEGDPNDPYAKCKYCGATYACHSKRNGTGSMKNHLDNCKKYPYQKKRDPTQKTLAFKPIETQATEGGECQVVCESFDLQNCREVLA 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73486770 73492725 - Tan0002083.5 Tan08g2172 762064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2172 880 MobiDBLite consensus disorder prediction 486 531 - -
Tan08g2172 880 SUPERFAMILY beta-beta-alpha zinc fingers 786 840 IPR036236 -
Tan08g2172 880 SMART bed5 783 835 - -
Tan08g2172 880 FunFam Transcription factor bHLH140 8 178 - -
Tan08g2172 880 SMART YBR022w_8 347 557 IPR002589 -
Tan08g2172 880 Pfam Macro domain 371 454 IPR002589 -
Tan08g2172 880 Pfam C2HE / C2H2 / C2HC zinc-binding finger 670 724 IPR032566 -
Tan08g2172 880 FunFam Transcription factor bHLH140 328 475 - -
Tan08g2172 880 ProSiteProfiles Zinc finger BED-type profile. 783 839 IPR003656 GO:0003677(InterPro)
Tan08g2172 880 MobiDBLite consensus disorder prediction 491 523 - -
Tan08g2172 880 MobiDBLite consensus disorder prediction 745 787 - -
Tan08g2172 880 SUPERFAMILY Macro domain-like 331 468 IPR043472 -
Tan08g2172 880 Gene3D Leucine Aminopeptidase, subunit E, domain 1 265 340 IPR043472 -
Tan08g2172 880 SUPERFAMILY HIT-like 535 709 IPR036265 -
Tan08g2172 880 Gene3D - 547 728 IPR036265 -
Tan08g2172 880 Pfam BED zinc finger 786 830 IPR003656 GO:0003677(InterPro)
Tan08g2172 880 MobiDBLite consensus disorder prediction 757 787 - -
Tan08g2172 880 Gene3D Leucine Aminopeptidase, subunit E, domain 1 341 480 IPR043472 -
Tan08g2172 880 ProSitePatterns HIT domain signature. 634 652 IPR019808 -
Tan08g2172 880 Gene3D - 4 178 IPR027417 -
Tan08g2172 880 ProSiteProfiles HIT domain profile. 552 660 IPR011146 GO:0003824(InterPro)
Tan08g2172 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 167 IPR027417 -
Tan08g2172 880 Pfam Scavenger mRNA decapping enzyme C-term binding 553 665 - -
Tan08g2172 880 Pfam AAA domain 22 150 - -
Tan08g2172 880 SUPERFAMILY Macro domain-like 274 317 IPR043472 -
Tan08g2172 880 PANTHER APRATAXIN-RELATED 84 743 - GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER)
Tan08g2172 880 ProSiteProfiles Macro domain profile. 335 556 IPR002589 -
Tan08g2172 880 FunFam aprataxin isoform X2 546 726 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2168 Tan-Chr8:73480803 Tan08g2172 Tan-Chr8:73486770 0.00E+00 dispersed
Tan08g2169 Tan-Chr8:73480803 Tan08g2172 Tan-Chr8:73486770 0.00E+00 dispersed
Tan08g2172 Tan-Chr8:73486770 Tan08g2174 Tan-Chr8:73488930 0.00E+00 dispersed
Tan08g2171 Tan-Chr8:73486770 Tan08g2172 Tan-Chr8:73486770 0.00E+00 tandem
Tan08g2172 Tan-Chr8:73486770 Tan08g2173 Tan-Chr8:73488930 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2172 K10863 - csv:101216867 1253.43