Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g2174 | ATGTCTGTGTGTAAAGGAAAGGAAGGGCAACAGAAGCTCTTAATGGTGATGTTAGTGGGCGCACCAGGAAGCGGCAAATCCACCTTCTGCGAACTCGTAATGGGTTCTTCTTCTCGCCCGTGGGTTCGAATCTGCCAGGATACCATTGGAAATGGCAAGTCTGGAACCAAAGCACAGTGCTTGAAGAGTGCAGCCAGTGCATTGAATGATGGAAAGAGTGTATTTGTGGACAGGTGCAATCTTGAAACAGAGCAGCGTGCAGATTTTGTGAAATTAGGCGGCCCTCGAGTGGATGTACATGCTGTTGTATTAGATCTTCCTGCTCAGCTTTGTATTTCCCGTTCGGTTAAGCGGACTGGTCATGAAGGGAATTTATCAGGTGGAAAAGCTGCTGCTGTTGTGAATAAAATGCTGCAAAGGAAAGAATTGCCCAAGCTAAATGAAGGGTTCTCTCGTATAACGTTTTGTCACAATGAGACTGACGTTCAATCCGCTATAGATATGTACAAATTGCTTGGTTTACATGATGTACTTTCGGATGGATGTTTTGGACAGAAGAATCCAGACAAGAAAGTACAACTTGGCATAATGAAGTTCTTAAAGAAAGCAGAAAATCCTTCTAAGACGTGCTCTAGTGCCAATACCGTTAAGGATTCTCCAATTTCTCAAACTACCCAGGAAAAGATCAACTCTTGTGATAAAAAGGAAGAGTCTGCCTTCACAGTGTTGAGCAGTGTCAATAAAGAGTCAACGAAAGGTGAGAATCCAATTCCAGGCGTTAGATCCTTAGAAGACAATATTTCTCAAAGTGATACTCCAACTCTTGCATTTCCATCTATTTCGACATCGGATTTCAAGTTTAGCCATGAAAAGGCTGCAGAAATTATCGTTGAGAAGGTTGAGGAATTCATGAGTAAGCTTGGAAATGCCAGGCTTGTGTTGGTAGACTTGAGTCATGGATCAAAGATTTTGTCTTTGGCTAAAGCTAAAGCAGCCAAGAAAAATATTAGCTCCGCCAAGTTTTTTACATTTGTAGGTGATATAACTAAACTCAGTTCAGAAGGTGGATTGCGCTGCAATGTAATAGCCAATGCTGCAAACTGGCGACTGAAACCAGGAGGGGGTGGTGTCAATGCTGCAATTTTTAGTGCTGCAGGTCCTGGTCTGGAAGTGGCAACTAAACAACAAGCAAACTCCCTTCGACCTGGCAACGCCGTGGCCGTTCAATTGCCTTCAACTTCTCCTCTGTTTAATAGAGAAGGAGTAACTCATGTCATACATGTTCTAGGACCCAACATGAATCCACAAAGGCCAAATTATCTCAACAATGACTACGATGAAGGTTGCAAGCTTCTTCGTGATGCTTACTCTTCCCTATTTCAAGGCTTTATTTCGATAGTAGAAGACCAATTTAAGTCGGCAAAGGGAATTCACGAACGCCTTGGCTCGGCACCTTCAGAACCACAAAGGCACTCTGAGAACACGCATCGCAAGTTTAAGAGAGAGGATTTGCAAAATCCTGAAAGAAGCAAAAAGTGGAAAGGATCTCAGGATTCAGCTGAAGCATTAAACCAAAACAGCAATAAGACTGTCCAGAAAATGAGTAAGCACTGGGGCTCGTGGGCACAAGCACTTTACAACACTGCAATGCATCCCGAGAGACATGGTGATACTGTACTGGAGACATCAGATGATGTTGTAGTATTGAATGATATTTATCCAAAAGCACGCCAGCATCTTCTGATAGTGGCTCGGTATGAAGGCCTCGATCAACTAGCCGATGTACATAAAAATCACCTTCCATTGTTGAGGACGATGCACGCCGTGGGTTTGAAGTGGATTGATAAGTTCTTTCATGAAGATGCATCATTGGTTTTTCGCCTCGGATACCACTCGGCTCCATCCATGAGGCAACTGCATCTACATGTTATAAGCCAGGATTTCAACTCCAGTCATCTAAAGAACAAGAAGCATTGGAATTCTTTCAACACCGATTTCTTCCGAGACTCTGTCGACGTTATGGACGAAGTCAGTAGCCATGGAAAGGTGAGCATCAATGACGATGAGAGCTTGATGTCTATGGAGTTGCGTTGCAACAGATGCAGAAGTGCTCATCCCAACTTACCCAAATTGAAAGCACATATTTCCAAATGCCAAGCGCCTTTCCCTTCCACGCTGCTTGAGGGCGGTCGTTTAGTAACCAAGTAA | 2208 | 43.66 | MSVCKGKEGQQKLLMVMLVGAPGSGKSTFCELVMGSSSRPWVRICQDTIGNGKSGTKAQCLKSAASALNDGKSVFVDRCNLETEQRADFVKLGGPRVDVHAVVLDLPAQLCISRSVKRTGHEGNLSGGKAAAVVNKMLQRKELPKLNEGFSRITFCHNETDVQSAIDMYKLLGLHDVLSDGCFGQKNPDKKVQLGIMKFLKKAENPSKTCSSANTVKDSPISQTTQEKINSCDKKEESAFTVLSSVNKESTKGENPIPGVRSLEDNISQSDTPTLAFPSISTSDFKFSHEKAAEIIVEKVEEFMSKLGNARLVLVDLSHGSKILSLAKAKAAKKNISSAKFFTFVGDITKLSSEGGLRCNVIANAANWRLKPGGGGVNAAIFSAAGPGLEVATKQQANSLRPGNAVAVQLPSTSPLFNREGVTHVIHVLGPNMNPQRPNYLNNDYDEGCKLLRDAYSSLFQGFISIVEDQFKSAKGIHERLGSAPSEPQRHSENTHRKFKREDLQNPERSKKWKGSQDSAEALNQNSNKTVQKMSKHWGSWAQALYNTAMHPERHGDTVLETSDDVVVLNDIYPKARQHLLIVARYEGLDQLADVHKNHLPLLRTMHAVGLKWIDKFFHEDASLVFRLGYHSAPSMRQLHLHVISQDFNSSHLKNKKHWNSFNTDFFRDSVDVMDEVSSHGKVSINDDESLMSMELRCNRCRSAHPNLPKLKAHISKCQAPFPSTLLEGGRLVTK | 735 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 73488930 | 73492725 | - | Tan0002083.9 | Tan08g2174 | 762066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g2174 | 735 | ProSitePatterns | HIT domain signature. | 627 | 645 | IPR019808 | - | |
Tan08g2174 | 735 | SUPERFAMILY | HIT-like | 528 | 702 | IPR036265 | - | |
Tan08g2174 | 735 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 319 | 467 | IPR043472 | - | |
Tan08g2174 | 735 | MobiDBLite | consensus disorder prediction | 484 | 516 | - | - | |
Tan08g2174 | 735 | Pfam | Macro domain | 364 | 447 | IPR002589 | - | |
Tan08g2174 | 735 | Gene3D | - | 5 | 171 | IPR027417 | - | |
Tan08g2174 | 735 | Pfam | Scavenger mRNA decapping enzyme C-term binding | 546 | 658 | - | - | |
Tan08g2174 | 735 | ProSiteProfiles | HIT domain profile. | 545 | 653 | IPR011146 | GO:0003824(InterPro) | |
Tan08g2174 | 735 | PANTHER | APRATAXIN-RELATED | 77 | 734 | - | GO:0000012(PANTHER)|GO:0003697(PANTHER)|GO:0003725(PANTHER)|GO:0005634(PANTHER)|GO:0030983(PANTHER)|GO:0033699(PANTHER)|GO:1990165(PANTHER) | |
Tan08g2174 | 735 | Pfam | AAA domain | 15 | 143 | - | - | |
Tan08g2174 | 735 | SUPERFAMILY | Macro domain-like | 267 | 310 | IPR043472 | - | |
Tan08g2174 | 735 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 15 | 160 | IPR027417 | - | |
Tan08g2174 | 735 | ProSiteProfiles | Macro domain profile. | 328 | 549 | IPR002589 | - | |
Tan08g2174 | 735 | FunFam | aprataxin isoform X2 | 539 | 719 | - | - | |
Tan08g2174 | 735 | MobiDBLite | consensus disorder prediction | 479 | 524 | - | - | |
Tan08g2174 | 735 | SUPERFAMILY | Macro domain-like | 324 | 461 | IPR043472 | - | |
Tan08g2174 | 735 | Pfam | C2HE / C2H2 / C2HC zinc-binding finger | 663 | 717 | IPR032566 | - | |
Tan08g2174 | 735 | FunFam | Transcription factor bHLH140 | 3 | 171 | - | - | |
Tan08g2174 | 735 | Gene3D | - | 540 | 721 | IPR036265 | - | |
Tan08g2174 | 735 | FunFam | Transcription factor bHLH140 | 321 | 468 | - | - | |
Tan08g2174 | 735 | SMART | YBR022w_8 | 340 | 550 | IPR002589 | - | |
Tan08g2174 | 735 | Gene3D | Leucine Aminopeptidase, subunit E, domain 1 | 240 | 318 | IPR043472 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g2170 | Tan-Chr8:73480803 | Tan08g2174 | Tan-Chr8:73488930 | 0.00E+00 | dispersed | |
Tan08g2172 | Tan-Chr8:73486770 | Tan08g2174 | Tan-Chr8:73488930 | 0.00E+00 | dispersed | |
Tan08g2173 | Tan-Chr8:73488930 | Tan08g2174 | Tan-Chr8:73488930 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g2174 | K10863 | - | csv:101216867 | 1236.48 |