Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2179 ATGAACAACACCACCACCGCCCCGCCGGTTAACATGGCCGCCGCATCTCCGCCATGGCTGAACACCGGCGACAACTCTTGGCAAATCACCGCCTCCACTCTCGTCGGACTTCAGAGCATGCCCGGCCTCGTAATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCCGTCAATTCTGCCTTTATGGCACTTTACGCCTTCGCCGCCGTTCTAATCTGTTGGGTCATCGTCGGCTACCGAATGGCCTTCGGCGATCAGCTCCTTCCTCTGTGGGGCAGAGGGGTTCCAGCTCTGGCCCAAAGTTACCTAATTAACCAAGCCAATATCCCTGAAAGTGGCCATACAAGCAACGACGGGAGGGTAACGCCGAGAATTGAGCCCAATGTTCCCATGGCGTCGCTGGTTTATTTTCAATTCACTTTTGCTGCGATTACTGTGATTTTACTTGCTGGCTCTGTTCTTGCCAGAATGAACATCAAAGCCTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCTCATACACCGTCGGCGCCTACACGCTTTGGGGCGGTGGCTTTCTCTTTCAATGGGGCGTAATTGATTACTCCGGCGGCTATGTTATTCATCTTTCTTCAGGGATTTCTGGCTTAACAGCGGCTTATTGGGTTGGGCCGAGGATTAAGAGTGATAGAGAGAGATTTCCGCCGAATAATGTGTTGCTGATGTTGGCCGGAGCTGGGTTGCTGTGGATGGGGTGGTCGGGATTTAACGGCGGCGCGCCGCACTCGGCCAACGTGGTGGCGTCGATTGCGGTGTTGAATACGAACGTGAGCGCGGCGACGAGCCTGCTGGTGTGGACCATTTTGGATGTGGTTTACTTTGGGAAGCCATCGGTGATCGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACCCCTGGCGCAGGAGTTGTGCAGACGTGGGCGGCTATTATTATGGGAGTTTTGGCCGGGAGTATTCCATGGGTATCCATGATGATTCTCCATAAAAAATTGAGTTTCTTGCAAAAGGCTGACGACACGCTTGGCGTATTTCACACGCACGCGGTGGCCGGAATGATGGGCGGGCTTTTAACAGGGCTTTTGGCGGAACCAACTCTTTGCAATCTTTACCTACCCATCACCGACACCCGCGGCGCCTTTTACGGCGAAAATGGCGGCGTTCAATTTCTGAAACAACTGGCCGGAGCCATGTTCGTAATCGGATGGAACATCGTCTCCACGACCGTTATTCTCCTCTTCATTCGGCTGCTTATGCCGTTGAGAATGCCGGACGAGGAGCTCATGATCGGCGACGACGCCGTCCACGGCGAGGAGGCTTATGCCCTTTGGGGCGACGGCGAGAAATTCGATCCCAGAAGGCACGGCAACGCCGCGGCCGATGCGGAAGAAGGAACGGCCTCGCCTTATATCAATGGGGCCAGAGGAATAACCATTAATTTGTGA 1470 53.88 MNNTTTAPPVNMAAASPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVIVGYRMAFGDQLLPLWGRGVPALAQSYLINQANIPESGHTSNDGRVTPRIEPNVPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFSYTVGAYTLWGGGFLFQWGVIDYSGGYVIHLSSGISGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVVYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAIIMGVLAGSIPWVSMMILHKKLSFLQKADDTLGVFHTHAVAGMMGGLLTGLLAEPTLCNLYLPITDTRGAFYGENGGVQFLKQLAGAMFVIGWNIVSTTVILLFIRLLMPLRMPDEELMIGDDAVHGEEAYALWGDGEKFDPRRHGNAAADAEEGTASPYINGARGITINL 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73515884 73522193 - Tan0003171.1 Tan08g2179 762071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2179 489 ProSitePatterns Ammonium transporters signature. 194 219 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan08g2179 489 PANTHER AMMONIUM TRANSPORTER MEP2 16 460 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Tan08g2179 489 Pfam Ammonium Transporter Family 27 449 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan08g2179 489 FunFam Ammonium transporter 9 452 - -
Tan08g2179 489 PRINTS Rhesus blood group protein signature 264 286 IPR002229 GO:0005886(InterPro)
Tan08g2179 489 PRINTS Rhesus blood group protein signature 138 154 IPR002229 GO:0005886(InterPro)
Tan08g2179 489 PRINTS Rhesus blood group protein signature 233 251 IPR002229 GO:0005886(InterPro)
Tan08g2179 489 PRINTS Rhesus blood group protein signature 319 337 IPR002229 GO:0005886(InterPro)
Tan08g2179 489 NCBIfam ammonium transporter 24 449 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Tan08g2179 489 Gene3D Ammonium transporter AmtB like domains 2 452 IPR029020 -
Tan08g2179 489 SUPERFAMILY Ammonium transporter 19 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2133 Tan-Chr3:76085926 Tan08g2179 Tan-Chr8:73515884 1.00E-145 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2179 K03320 - csv:101207321 883.634