Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g2202 | ATGAATAACATAAACCAAGCGATAAATGCACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGCTATGGAAGTTCCGAAATTCAAGTCTCTTCAACCTCCTTCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTTAATTCCCCTCTCCTTTTCTCCTTTGGTGTTTTTCCCTCTCCGACTACTGGCGCCTTGAATTTGAGAAATGATTATGATGGTGACGACCAGCAAGAAATGAAAGGAGATTTGAAAAATTACTCTGATTCTTCGTTTCATCCTCAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCGTCTTCTTCCAATAACGTGACTCCACTGAATCGAGGCGGTTTGTCGTGTGAGGAAAGTGGAGCGAAATCTGAATTATTTGTTGCGTCGGAAATGGCGGCAGCTCAATCAAAGCAAATTTCTCAGCTGCCTCATTACAACAGAGATCAGCAGCATAAATCGGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGTGAAAATCCACGTAGTTATTATAAGTGCACTTTTCCAAGCTGCCCAACGAAGAAGAAAGTTGAAAGATCGTTAGATGGGCAAATTACTGAGATTGTTTACAAGGGAAGTCATAATCACGCCAAGCCCCCGCCGACGAGACGTTCCGGTAACTCCGCCGTTTATGATCCGTCCACGGCGGCGGAATCCGCCGTCCTGCAGGAGGATTCCTCTGTCTCCGTCGGGGATGATGAATTGGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGAAAATGAAAACGAACCGGAAGCTAAGAGATGGAAAGGGGATAATGAAAATGAGGGATTTTCTGGAGGTGGAAGCAGAACAGTGAAGGAGCCAAGAATTGTGGTTCAAACAACGAGCGAAATTGACATATTGCCTGATGGCTATAGATGGAGAAAATATGGACAAAAAGTTGTCAAAGGAAATCCAAATCCGAGGAGCTATTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGCGAGCGGCCAACGACATGAGGGCCGTGATCACCACCTACGAAGGCAAACACAACCACGAAGTTCCAGCAGCACGTGGAGGCGGCGGTGGCTACAATGCCATCAACCGACCAGTACCGACAAACATCCCGACGCCCGTGAGGCCATCACCTGTAATCAGCCACTCCTTCCCGGCAAATTTTCCGGCCACCTTCCGGCCAGCAAATTTACCTATAGCAGAAATGGGAGCACAAGCACCATTCGCATTTCAAACATCACAAGGAGTGCCACCAAGTTTTCAAGTTTCAGGCTTTGGATCAGCAGCCAAAGAAGAAGCCAAAGATGACATATTCTTCAACTCATTTCTATCTTAG | 1431 | 46.05 | MNNINQAINALAGGSSDNRTNNFAMEVPKFKSLQPPSFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNLRNDYDGDDQQEMKGDLKNYSDSSFHPQTGSSVSSYFQSSSSNNVTPLNRGGLSCEESGAKSELFVASEMAAAQSKQISQLPHYNRDQQHKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPPPTRRSGNSAVYDPSTAAESAVLQEDSSVSVGDDELEPNSPFSNSVDENENEPEAKRWKGDNENEGFSGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGGGGGYNAINRPVPTNIPTPVRPSPVISHSFPANFPATFRPANLPIAEMGAQAPFAFQTSQGVPPSFQVSGFGSAAKEEAKDDIFFNSFLS | 476 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 73633887 | 73638280 | + | Tan0012946.1 | Tan08g2202 | 762094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g2202 | 476 | MobiDBLite | consensus disorder prediction | 96 | 120 | - | - | |
Tan08g2202 | 476 | ProSiteProfiles | WRKY domain profile. | 317 | 382 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | MobiDBLite | consensus disorder prediction | 239 | 279 | - | - | |
Tan08g2202 | 476 | SUPERFAMILY | WRKY DNA-binding domain | 169 | 231 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | Gene3D | WRKY domain | 159 | 232 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | MobiDBLite | consensus disorder prediction | 280 | 294 | - | - | |
Tan08g2202 | 476 | Pfam | WRKY DNA -binding domain | 173 | 228 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | Pfam | WRKY DNA -binding domain | 324 | 380 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | FunFam | WRKY transcription factor | 161 | 232 | - | - | |
Tan08g2202 | 476 | Gene3D | WRKY domain | 309 | 375 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | ProSiteProfiles | WRKY domain profile. | 173 | 231 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 110 | 384 | IPR044810 | GO:0003700(InterPro) | |
Tan08g2202 | 476 | FunFam | WRKY transcription factor 33 | 309 | 375 | - | - | |
Tan08g2202 | 476 | MobiDBLite | consensus disorder prediction | 155 | 177 | - | - | |
Tan08g2202 | 476 | SMART | WRKY_cls | 172 | 230 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | SMART | WRKY_cls | 322 | 381 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan08g2202 | 476 | MobiDBLite | consensus disorder prediction | 81 | 120 | - | - | |
Tan08g2202 | 476 | MobiDBLite | consensus disorder prediction | 221 | 305 | - | - | |
Tan08g2202 | 476 | SUPERFAMILY | WRKY DNA-binding domain | 314 | 382 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan05g0530 | Tan-Chr5:3678941 | Tan08g2202 | Tan-Chr8:73633887 | 1.60E-87 | dispersed | |
Tan08g2202 | Tan-Chr8:73633887 | Tan09g0604 | Tan-Chr9:52184701 | 5.10E-60 | dispersed | |
Tan08g2202 | Tan-Chr8:73633887 | Tan08g2412 | Tan-Chr8:75363300 | 6.20E-90 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28242 | PF03106 | WRKY | 9.60E-25 | CL0274 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g2202 | K13424 | - | csv:101205651 | 742.265 |