Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2202 ATGAATAACATAAACCAAGCGATAAATGCACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGCTATGGAAGTTCCGAAATTCAAGTCTCTTCAACCTCCTTCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTTAATTCCCCTCTCCTTTTCTCCTTTGGTGTTTTTCCCTCTCCGACTACTGGCGCCTTGAATTTGAGAAATGATTATGATGGTGACGACCAGCAAGAAATGAAAGGAGATTTGAAAAATTACTCTGATTCTTCGTTTCATCCTCAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCGTCTTCTTCCAATAACGTGACTCCACTGAATCGAGGCGGTTTGTCGTGTGAGGAAAGTGGAGCGAAATCTGAATTATTTGTTGCGTCGGAAATGGCGGCAGCTCAATCAAAGCAAATTTCTCAGCTGCCTCATTACAACAGAGATCAGCAGCATAAATCGGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGTGAAAATCCACGTAGTTATTATAAGTGCACTTTTCCAAGCTGCCCAACGAAGAAGAAAGTTGAAAGATCGTTAGATGGGCAAATTACTGAGATTGTTTACAAGGGAAGTCATAATCACGCCAAGCCCCCGCCGACGAGACGTTCCGGTAACTCCGCCGTTTATGATCCGTCCACGGCGGCGGAATCCGCCGTCCTGCAGGAGGATTCCTCTGTCTCCGTCGGGGATGATGAATTGGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGAAAATGAAAACGAACCGGAAGCTAAGAGATGGAAAGGGGATAATGAAAATGAGGGATTTTCTGGAGGTGGAAGCAGAACAGTGAAGGAGCCAAGAATTGTGGTTCAAACAACGAGCGAAATTGACATATTGCCTGATGGCTATAGATGGAGAAAATATGGACAAAAAGTTGTCAAAGGAAATCCAAATCCGAGGAGCTATTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGCGAGCGGCCAACGACATGAGGGCCGTGATCACCACCTACGAAGGCAAACACAACCACGAAGTTCCAGCAGCACGTGGAGGCGGCGGTGGCTACAATGCCATCAACCGACCAGTACCGACAAACATCCCGACGCCCGTGAGGCCATCACCTGTAATCAGCCACTCCTTCCCGGCAAATTTTCCGGCCACCTTCCGGCCAGCAAATTTACCTATAGCAGAAATGGGAGCACAAGCACCATTCGCATTTCAAACATCACAAGGAGTGCCACCAAGTTTTCAAGTTTCAGGCTTTGGATCAGCAGCCAAAGAAGAAGCCAAAGATGACATATTCTTCAACTCATTTCTATCTTAG 1431 46.05 MNNINQAINALAGGSSDNRTNNFAMEVPKFKSLQPPSFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTTGALNLRNDYDGDDQQEMKGDLKNYSDSSFHPQTGSSVSSYFQSSSSNNVTPLNRGGLSCEESGAKSELFVASEMAAAQSKQISQLPHYNRDQQHKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPPPTRRSGNSAVYDPSTAAESAVLQEDSSVSVGDDELEPNSPFSNSVDENENEPEAKRWKGDNENEGFSGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGGGGGYNAINRPVPTNIPTPVRPSPVISHSFPANFPATFRPANLPIAEMGAQAPFAFQTSQGVPPSFQVSGFGSAAKEEAKDDIFFNSFLS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73633887 73638280 + Tan0012946.1 Tan08g2202 762094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2202 476 MobiDBLite consensus disorder prediction 96 120 - -
Tan08g2202 476 ProSiteProfiles WRKY domain profile. 317 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 MobiDBLite consensus disorder prediction 239 279 - -
Tan08g2202 476 SUPERFAMILY WRKY DNA-binding domain 169 231 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 Gene3D WRKY domain 159 232 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 MobiDBLite consensus disorder prediction 280 294 - -
Tan08g2202 476 Pfam WRKY DNA -binding domain 173 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 Pfam WRKY DNA -binding domain 324 380 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 FunFam WRKY transcription factor 161 232 - -
Tan08g2202 476 Gene3D WRKY domain 309 375 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 ProSiteProfiles WRKY domain profile. 173 231 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 110 384 IPR044810 GO:0003700(InterPro)
Tan08g2202 476 FunFam WRKY transcription factor 33 309 375 - -
Tan08g2202 476 MobiDBLite consensus disorder prediction 155 177 - -
Tan08g2202 476 SMART WRKY_cls 172 230 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 SMART WRKY_cls 322 381 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan08g2202 476 MobiDBLite consensus disorder prediction 81 120 - -
Tan08g2202 476 MobiDBLite consensus disorder prediction 221 305 - -
Tan08g2202 476 SUPERFAMILY WRKY DNA-binding domain 314 382 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g0530 Tan-Chr5:3678941 Tan08g2202 Tan-Chr8:73633887 1.60E-87 dispersed
Tan08g2202 Tan-Chr8:73633887 Tan09g0604 Tan-Chr9:52184701 5.10E-60 dispersed
Tan08g2202 Tan-Chr8:73633887 Tan08g2412 Tan-Chr8:75363300 6.20E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28242 PF03106 WRKY 9.60E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2202 K13424 - csv:101205651 742.265