Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2242 ATGCTTTTCAAACTATTCCTCATTCTTGTCTTAGTTCCTGCTTCTGTTTATGGTTTGGACACTGTTTTCAATGATGATGTTCTGGGTTTGATAGTATTTAAAGCTGGCCTTCAAGATCCCTTGGGTAAACTCGTTACATGGAATGAAGACGATGAAACTCCCTGCAATTGGTTTGGTGTTAAATGCAATCCTAAAACCAATAGGGTCTCTGAGCTTGTCCTTGATGGCTTTTCTTTGTCTGGCCACATTGATCGTGGACTCTTGAGGCTGCAGTTTCTTCAAATACTCTCACTTGCCAACAACAATTTCTCTGGCACAATTAACTCTGCTCTTTCTCATCTTACAAATTTGCAAGTTATTGATTTGAGTCACAACAGTTTATCTGGACCCATTCCTCAACAACTTTTCTTGCAATGTGGCTCTATAAGAGTTATTTCATTTGCCAGCAACAATCTCACAGGAAATATCCCTCAATCCTTAACCTCTTGCTTCTCTCTTGAGATTCTCAACTTTTCATCCAACCACCTCACTGGGAAATTGCCTTCTGGGTTATGGTATTTGAGGGGGATTCAGTCTCTTGATTTCTCAGACAACTTGCTTGAGGGACAGATTCCTCCTGGAATTCAAAATCTATACGATTTGAGATTTGTTAACTTACAGAAGAATCGTTTTTCTGGAAGGCTTCCTGAGGATATTGGTGGCTGCTTGCTTTTAAAATCAATCGATTTTAGTGAGAATATCCTTTCTGGGGGTCTTCCTGAGTCAATGCAGATGCTTAGTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTTATGGGTGAAGTCCCTGGTTGGATTGGGGAGCTTAAAAATCTTGAGACTTTAGATCTTTCTACCAATAACTTTTCAGGTCAGATACCAAGTTCAATTGGCAACCTCCAATTGTTGAAGAAGTTCAATTTATCCATGAACTATTTGACTGGAAACTTGCCAGAATCCATGGCAAATTGTAATAATCTCTTGAGTATTGATGCTAGCCATAATCATTTGAATGGCAATCTCCCCTCATGGATTTTTAGGGCAGCTATGCCTAGTGGAACCTACAGACTGGGAGAAACTCTGTCAAGTCCAACCTCTTTTGAGGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAATATATCAAGAAACTATCTCGTGGGTTCTATTCCAGGGAGCATTGGTGAGCTAAAATCAGTATATGCTCTTGACTTCAGTGACAATCAATTAAATGGAAGTATTCCTGCTGAAATTGGAGGAGCCATTTCACTCAAGGAATTGAGGCTGGAGAAGAACTTCCTCACTGGGGAAATTCCAGTCAAGATTGACAAATGCTCGTTGTTAACATCATTGATTCTTTCTCACAACAACCTCACAGGCTCAATTCCTGCTGCTGTTGCAAATCTCTCCAACCTTGAAAATGTAGACTTATCTTTCAACAAACTCTCAGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTTTTTTAATATCTCCCACAATCACCTTGAGGGGGAACTCCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACATAACCCATCTCTTTGTGGTGCTGTTGTCAATCGTTCCTGCCCCTCCGTCCATCCAAAACCGATCGTCCTAAACCCGAATTCTTCTGATACCAATGGCAATTCCCCCTCCCACAAGAATCATCATGAGATCATACTTAGCATATCTTCCATCATTGCTATTGGTGCAGCTTCTTTTATCCTACTTGGAGTGGTAGCTGTGACTATCCTCAACATCCGTGCAAGGTCCTCACAGTCACGTTCTGCTGCTCTTGCATTATCTGCTGGGGAGGATTTTAGCTGCTCCCCAAAAACTAATCCAGACTACGGAAAGCTCGTCATGTTTTCAGGAGACGCGGAGTTTGTAGTTGGTGCTCAAGCATTGCTGAACCAGGACTGTGAACTCGGTCGAGGTGGATTTGGAGTTGTGTACAGAACAGCGCTTCGAGACGGGTGTTTAGTTGCAATCAAGAAGCTAACTGTCACAAGTTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATGTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATTTATGAATACGTCCAAAATGGAAGTTTGTATAAACATCTACAAGATGGAACTTGCGACAATTGTTTGTCATGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATCTGCACCAGAATAACATAATTCATTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTTTGGGAAACCAAAAGTGGGGGACTATGGCTTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGTGCTTTGGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAATGTGATGTGTATGGTTTTGGCATCTTGGTTTTAGAAGTGGTGACAGGAAAAAGACCCGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTAAGGGCAGCTTTGGATGAAGGCACGGTCGAGCAATGTGTCGATGAGAGGCTCCGATCAAACTTCCGAGTTGAAGAGGCCATTCCTGTAATGAAACTGGGTTTGATATGTGCATCTCAAGTACCATCGAACAGGCCGGACATGAATGAGGTTGTCAACATATTAGAGTTGATCCAATCCCCCTCTGAAGCTGATGAGGAGTTGGAATGA 2868 42.19 MLFKLFLILVLVPASVYGLDTVFNDDVLGLIVFKAGLQDPLGKLVTWNEDDETPCNWFGVKCNPKTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFSGTINSALSHLTNLQVIDLSHNSLSGPIPQQLFLQCGSIRVISFASNNLTGNIPQSLTSCFSLEILNFSSNHLTGKLPSGLWYLRGIQSLDFSDNLLEGQIPPGIQNLYDLRFVNLQKNRFSGRLPEDIGGCLLLKSIDFSENILSGGLPESMQMLSSCTYLNLRGNSLMGEVPGWIGELKNLETLDLSTNNFSGQIPSSIGNLQLLKKFNLSMNYLTGNLPESMANCNNLLSIDASHNHLNGNLPSWIFRAAMPSGTYRLGETLSSPTSFEGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNYLVGSIPGSIGELKSVYALDFSDNQLNGSIPAEIGGAISLKELRLEKNFLTGEIPVKIDKCSLLTSLILSHNNLTGSIPAAVANLSNLENVDLSFNKLSGSLPKELTNLSHLLFFNISHNHLEGELPVGGFFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNGNSPSHKNHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALALSAGEDFSCSPKTNPDYGKLVMFSGDAEFVVGAQALLNQDCELGRGGFGVVYRTALRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNVVALEGYYWTTSLQLLIYEYVQNGSLYKHLQDGTCDNCLSWRQRFKIVLGMAKGLAYLHQNNIIHYNLKSTNVLIDSFGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRAALDEGTVEQCVDERLRSNFRVEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEADEELE 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73945426 73948855 - Tan0003149.1 Tan08g2242 762134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2242 955 Gene3D Phosphorylase Kinase; domain 1 661 748 - -
Tan08g2242 955 Gene3D Ribonuclease Inhibitor 189 256 IPR032675 -
Tan08g2242 955 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Tan08g2242 955 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 24 302 - -
Tan08g2242 955 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 666 748 - -
Tan08g2242 955 SUPERFAMILY RNI-like 252 556 - -
Tan08g2242 955 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 749 950 - -
Tan08g2242 955 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 263 283 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 377 398 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 165 187 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 93 114 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 116 135 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 400 422 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 310 331 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 Pfam Protein tyrosine and serine/threonine kinase 673 940 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g2242 955 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 303 568 - -
Tan08g2242 955 ProSitePatterns Protein kinases ATP-binding region signature. 678 701 IPR017441 GO:0005524(InterPro)
Tan08g2242 955 SUPERFAMILY L domain-like 39 352 - -
Tan08g2242 955 Pfam Leucine rich repeat 473 531 IPR001611 GO:0005515(InterPro)
Tan08g2242 955 SUPERFAMILY Protein kinase-like (PK-like) 676 944 IPR011009 -
Tan08g2242 955 Gene3D Transferase(Phosphotransferase) domain 1 749 954 - -
Tan08g2242 955 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Tan08g2242 955 PANTHER OS05G0588300 PROTEIN 375 467 IPR050994 -
Tan08g2242 955 ProSiteProfiles Protein kinase domain profile. 672 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g2242 955 Gene3D Ribonuclease Inhibitor 257 360 IPR032675 -
Tan08g2242 955 SMART LRR_typ_2 90 113 IPR003591 -
Tan08g2242 955 SMART LRR_typ_2 211 235 IPR003591 -
Tan08g2242 955 SMART LRR_typ_2 283 307 IPR003591 -
Tan08g2242 955 SMART LRR_typ_2 494 517 IPR003591 -
Tan08g2242 955 SMART LRR_typ_2 187 210 IPR003591 -
Tan08g2242 955 SMART LRR_typ_2 398 422 IPR003591 -
Tan08g2242 955 SMART LRR_typ_2 518 542 IPR003591 -
Tan08g2242 955 SMART LRR_typ_2 114 138 IPR003591 -
Tan08g2242 955 Gene3D Ribonuclease Inhibitor 361 567 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan04g1429 Tan-Chr4:16740121 Tan08g2242 Tan-Chr8:73945426 2.70E-158 dispersed
Tan08g2242 Tan-Chr8:73945426 Tan10g1269 Tan-Chr10:14433395 7.60E-23 dispersed
Tan08g2242 Tan-Chr8:73945426 Tan11g0336 Tan-Chr11:2634873 1.20E-182 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67996 PF07714 PK_Tyr_Ser-Thr 2.70E-42 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2242 - - - 0.0