Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2248 ATGGTTTCGTCTCAGTTTTGTGGCTTGACCAAAACTAGCAAGAGCAACCCGATTCGAAGTCAGCTTCTTTTCCCTACAAACATTACTGATTGCGCATCTCTGGATTCTGTTAATCTGGATTTCTCTGATGTATTTGGCTCCATATCGCTTCATGCCTCAACTGAAGTGGATGCTATTGATTTAGATTTTCCTGTATGCCAGGAAGATTCACGTGAACTTATATATGATGATCCTGAAGTTATTTACAACCGATCTCATTCTTTGGTTGGTCCCTCTTCTTGTGCAAGTCAAACCCTTAAGCTAAGCAAACTAACTATTTCCGAGACTGAGGGTTCAAGGGAATTAGTTGCATGTATCAGCGAGGAGACCAACAGCAAACTTCAAGAACATTTAAGTGATTCATTTACTGATAGAACTCTTGAAGATGTTGATAGAAGTTACACGAAAGTTGAGAGTGTAGGGATCGATGACTTTGAAGTTCTCAAGGTTGTTGGGCAGGGTGCATTTGCTAAGGTTTATCAGGTGAGGCGAAAGGGTACGTTAGAGATATATGCAATGAAGGTCATGCGAAAGGACAAAATAATGGAGAAGAACCATGTTGAATACATGAAAGCCGAGAGGGATATTTTAACAAAAACTGACCATCCATTCATTGTCCAGCTAAGATACTCATTCCAAACAAAATACAGGCTATATCTTGTTCTGGATTTTGTAAATGGTGGCCATCTTTTCTTTCAGCTCTATCATCATGGGCTTTTCAGAGAAGATCTTGCTCGTATTTATGCTGCCGAGATTGTTTCGGCTGTTTCTCATCTCCATTCAAATGGCATAATGCACCGAGATCTTAAACCTGAAAATATTTTACTAGATGACCTTGGCCATGTTATGTTGACTGATTTCGGTCTGGCAAAACAGTTTGAAGAGAATACAAGATCGAATTCTATGTGTGGAACACTAGAATATATGCCACCGGAAATAGTTCTTGGAAAAGGCCACGACAAGGCTGCAGATTGGTGGAGTGTAGGAATACTATTATTCGAAATGCTTACTGGGAAGCCTCCTTTTACTGGGAATCGTGAAAAAGTCCAACAAAAGATAGTGAAGGACAAGATCAAGCTGCCAGCATATTTGTCTAGTGAAGCACACTCTCTTTTAAAAGGGCTGCTTCAAAAGGAGGCGGGTAAGCGATTGAGAAGTGAGGAAATCAAAGGCCACAAATGGTTCAAACCAATCAACTGGAAGAAATTGGAGAAGCGGGAAATCCAACCAAGCTTTCGCCCTGAAGTTGCTGGTAAACACTGTGTAGCCAACTTTGAGAAGCGCTGGACTGAAATGCCACTTATTGATTCTCCGGTTGCCAGTCCTAAAACTGAAGGCAACCCTTTCACTGGCTTCAGCTATGTGAAACCTGCAGCCTCATTTCTCAACCTCAACATCTATTGA 1443 41.23 MVSSQFCGLTKTSKSNPIRSQLLFPTNITDCASLDSVNLDFSDVFGSISLHASTEVDAIDLDFPVCQEDSRELIYDDPEVIYNRSHSLVGPSSCASQTLKLSKLTISETEGSRELVACISEETNSKLQEHLSDSFTDRTLEDVDRSYTKVESVGIDDFEVLKVVGQGAFAKVYQVRRKGTLEIYAMKVMRKDKIMEKNHVEYMKAERDILTKTDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDDLGHVMLTDFGLAKQFEENTRSNSMCGTLEYMPPEIVLGKGHDKAADWWSVGILLFEMLTGKPPFTGNREKVQQKIVKDKIKLPAYLSSEAHSLLKGLLQKEAGKRLRSEEIKGHKWFKPINWKKLEKREIQPSFRPEVAGKHCVANFEKRWTEMPLIDSPVASPKTEGNPFTGFSYVKPAASFLNLNIY 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 73977320 73980771 - Tan0007326.1 Tan08g2248 762140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2248 480 FunFam Non-specific serine/threonine protein kinase 238 427 - -
Tan08g2248 480 ProSiteProfiles Protein kinase domain profile. 158 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g2248 480 Pfam Protein kinase domain 158 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g2248 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan08g2248 480 FunFam Non-specific serine/threonine protein kinase 155 261 - -
Tan08g2248 480 CDD STKc_AGC 164 408 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
Tan08g2248 480 ProSitePatterns Protein kinases ATP-binding region signature. 164 187 IPR017441 GO:0005524(InterPro)
Tan08g2248 480 SMART pkinase_C_6 409 469 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g2248 480 SMART serkin_6 158 408 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g2248 480 Gene3D Phosphorylase Kinase; domain 1 155 448 - -
Tan08g2248 480 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 477 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan08g2248 480 Gene3D Transferase(Phosphotransferase) domain 1 238 427 - -
Tan08g2248 480 PANTHER RIBOSOMAL PROTEIN S6 KINASE 125 473 - -
Tan08g2248 480 SUPERFAMILY Protein kinase-like (PK-like) 155 467 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2248 Tan-Chr8:73977320 Tan09g2184 Tan-Chr9:71899468 3.80E-132 dispersed
Tan10g0017 Tan-Chr10:455220 Tan08g2248 Tan-Chr8:73977320 8.40E-38 dispersed
Tan08g2248 Tan-Chr8:73977320 Tan02g0526 Tan-Chr2:4728862 6.70E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
67997 PF00069 Pkinase 8.20E-75 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2248 K04688 - mdm:103423523 712.22