Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan08g2248 | ATGGTTTCGTCTCAGTTTTGTGGCTTGACCAAAACTAGCAAGAGCAACCCGATTCGAAGTCAGCTTCTTTTCCCTACAAACATTACTGATTGCGCATCTCTGGATTCTGTTAATCTGGATTTCTCTGATGTATTTGGCTCCATATCGCTTCATGCCTCAACTGAAGTGGATGCTATTGATTTAGATTTTCCTGTATGCCAGGAAGATTCACGTGAACTTATATATGATGATCCTGAAGTTATTTACAACCGATCTCATTCTTTGGTTGGTCCCTCTTCTTGTGCAAGTCAAACCCTTAAGCTAAGCAAACTAACTATTTCCGAGACTGAGGGTTCAAGGGAATTAGTTGCATGTATCAGCGAGGAGACCAACAGCAAACTTCAAGAACATTTAAGTGATTCATTTACTGATAGAACTCTTGAAGATGTTGATAGAAGTTACACGAAAGTTGAGAGTGTAGGGATCGATGACTTTGAAGTTCTCAAGGTTGTTGGGCAGGGTGCATTTGCTAAGGTTTATCAGGTGAGGCGAAAGGGTACGTTAGAGATATATGCAATGAAGGTCATGCGAAAGGACAAAATAATGGAGAAGAACCATGTTGAATACATGAAAGCCGAGAGGGATATTTTAACAAAAACTGACCATCCATTCATTGTCCAGCTAAGATACTCATTCCAAACAAAATACAGGCTATATCTTGTTCTGGATTTTGTAAATGGTGGCCATCTTTTCTTTCAGCTCTATCATCATGGGCTTTTCAGAGAAGATCTTGCTCGTATTTATGCTGCCGAGATTGTTTCGGCTGTTTCTCATCTCCATTCAAATGGCATAATGCACCGAGATCTTAAACCTGAAAATATTTTACTAGATGACCTTGGCCATGTTATGTTGACTGATTTCGGTCTGGCAAAACAGTTTGAAGAGAATACAAGATCGAATTCTATGTGTGGAACACTAGAATATATGCCACCGGAAATAGTTCTTGGAAAAGGCCACGACAAGGCTGCAGATTGGTGGAGTGTAGGAATACTATTATTCGAAATGCTTACTGGGAAGCCTCCTTTTACTGGGAATCGTGAAAAAGTCCAACAAAAGATAGTGAAGGACAAGATCAAGCTGCCAGCATATTTGTCTAGTGAAGCACACTCTCTTTTAAAAGGGCTGCTTCAAAAGGAGGCGGGTAAGCGATTGAGAAGTGAGGAAATCAAAGGCCACAAATGGTTCAAACCAATCAACTGGAAGAAATTGGAGAAGCGGGAAATCCAACCAAGCTTTCGCCCTGAAGTTGCTGGTAAACACTGTGTAGCCAACTTTGAGAAGCGCTGGACTGAAATGCCACTTATTGATTCTCCGGTTGCCAGTCCTAAAACTGAAGGCAACCCTTTCACTGGCTTCAGCTATGTGAAACCTGCAGCCTCATTTCTCAACCTCAACATCTATTGA | 1443 | 41.23 | MVSSQFCGLTKTSKSNPIRSQLLFPTNITDCASLDSVNLDFSDVFGSISLHASTEVDAIDLDFPVCQEDSRELIYDDPEVIYNRSHSLVGPSSCASQTLKLSKLTISETEGSRELVACISEETNSKLQEHLSDSFTDRTLEDVDRSYTKVESVGIDDFEVLKVVGQGAFAKVYQVRRKGTLEIYAMKVMRKDKIMEKNHVEYMKAERDILTKTDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHHGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDDLGHVMLTDFGLAKQFEENTRSNSMCGTLEYMPPEIVLGKGHDKAADWWSVGILLFEMLTGKPPFTGNREKVQQKIVKDKIKLPAYLSSEAHSLLKGLLQKEAGKRLRSEEIKGHKWFKPINWKKLEKREIQPSFRPEVAGKHCVANFEKRWTEMPLIDSPVASPKTEGNPFTGFSYVKPAASFLNLNIY | 480 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 73977320 | 73980771 | - | Tan0007326.1 | Tan08g2248 | 762140 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan08g2248 | 480 | FunFam | Non-specific serine/threonine protein kinase | 238 | 427 | - | - | |
Tan08g2248 | 480 | ProSiteProfiles | Protein kinase domain profile. | 158 | 408 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g2248 | 480 | Pfam | Protein kinase domain | 158 | 408 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g2248 | 480 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 277 | 289 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan08g2248 | 480 | FunFam | Non-specific serine/threonine protein kinase | 155 | 261 | - | - | |
Tan08g2248 | 480 | CDD | STKc_AGC | 164 | 408 | IPR045270 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Tan08g2248 | 480 | ProSitePatterns | Protein kinases ATP-binding region signature. | 164 | 187 | IPR017441 | GO:0005524(InterPro) | |
Tan08g2248 | 480 | SMART | pkinase_C_6 | 409 | 469 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g2248 | 480 | SMART | serkin_6 | 158 | 408 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g2248 | 480 | Gene3D | Phosphorylase Kinase; domain 1 | 155 | 448 | - | - | |
Tan08g2248 | 480 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 409 | 477 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan08g2248 | 480 | Gene3D | Transferase(Phosphotransferase) domain 1 | 238 | 427 | - | - | |
Tan08g2248 | 480 | PANTHER | RIBOSOMAL PROTEIN S6 KINASE | 125 | 473 | - | - | |
Tan08g2248 | 480 | SUPERFAMILY | Protein kinase-like (PK-like) | 155 | 467 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g2248 | Tan-Chr8:73977320 | Tan09g2184 | Tan-Chr9:71899468 | 3.80E-132 | dispersed | |
Tan10g0017 | Tan-Chr10:455220 | Tan08g2248 | Tan-Chr8:73977320 | 8.40E-38 | dispersed | |
Tan08g2248 | Tan-Chr8:73977320 | Tan02g0526 | Tan-Chr2:4728862 | 6.70E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
67997 | PF00069 | Pkinase | 8.20E-75 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan08g2248 | K04688 | - | mdm:103423523 | 712.22 |