Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan08g2262 ATGGCTTCCCCACAAAACGTGAAAGCGATGCGCCATTCAAATCAACGCGCCATCTCCCCAACCTCCGCCTTCCTCCGCCCCTTCTTAAATTCCCTCATCTTCCTCAACCCTTCATTTATTCGCGATTCTGTTTCCTCTCTATCATTCATTCTAAATCAAACTCTGCTTCCACTTAAATTAATTGCTCCTTTAATGGCGAAATTAACCAGAAAACCACTTCTGTACTTTTGCTTGTTGATCCTGTTTCCGATCGTGGTTCCGGCTGCGGATCTTGCGCAGACAGAGTGCTTGAAAGTGCCCTCCTCTGAGTTCTCTAACTCACTCCTCTCCACCATCGGCGTCGTCCGCCAGGTTATGGCCATTTTCTCTCCTTTCAGTAAATTGCTCGGCGATTCACGACTTTCCACCGCCATTTCCGACTGTCTCGATTTGCTTGACTCTTCTGTTGATCAGTTGAGTTGGTCCCTCTCCGCCACTCAAAATCCCAAGGCTAAAAACAACAGCAGCACCGGAGATCTGAGTTCTGATCTGAAAACATGGCTGAGCGCGGCAGTCGTCAATCCAGAAACATGCATGGACGGATTCGAGGGCACCAATAGCATTGTCAAAGATCTAGCGTCTGCCGGCATCAACCAATTAACTTCACAGGTCTATGAGCTTCTTTCCATGGTGAAATCAATCCCCAATGAGCCGGGTCGAAAATTGGAGAGCGAGTTCCCTTCCTGGGTCAAATCGGAGGACCGGAACCTGCTGCAACTAAATGACTTGGCCGCCGATGCGACTGTGGCCGCCGATGGGACGGGAGATTTCACCAATGTGATGGATGCAGTGCTAGCGGCCCCCGAAAATAGCGCCCGACGGTATGTCATATACATAAAGAGGGGTGTGTATTTCGAGAACGTTGAGATTAAGAAGAAGAAATGGAATCTCATGATGATTGGAGATGGAATAGACGCCACCGTCATTTCGGGTAATCGGAGTTTCATCGACGGTTGGACCACATTCCGTTCAGCCACCTTCGCCGTTAGTGGAAGAAGATTCATAGCACGAGACATAACGTTCGAGAACACCGCCGGCGCAGAGAAACATCAAGCGGTGGCACTTCGATCGGACTCCGATCTATCGGTATTTTTTAGATGTCGTATTCGAGGATACCAAGACACTCTGTATACGCACACCATGCGCCAATTCTACCGCGAGTGTGAGATCAGTGGCACTGTCGACTTTCTCTTCGGCGATGCCACAGTCGTTTTTCAAAACTGCAGCATCCTCGCCAAGAAGGGTCTTCCCAACCAGAAGAACACCATCACAGCTCAGGGACGGAAAGACCCAAATCAACCCACCGGCTTCTCCATTCAATTCTGCAACATCTCTGCAGATTCAGACCTTCAACCCTCGGTTAACGCCACGGCTACGTACCTTGGGAGGCCATGGAAGGAGTATTCGAGAACCATTATTATGCAATCGTACATGAGTAATGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAACGGCGGTGGGTTTGCTTTGAATACACTGTTCTACGCTGAGTTTATGAATTATGGGCCGGGGGCAGGCTTGACGAAGCGTGTCAATTGGCCTGGTTACCATCGATTGAATCAATCGATGGAAGCTGCGAACTTCACTGTAGCGCAATTCATTGAAGGGAACTTGTGGTTGCCGTCCACGGGTGTCAAATACACGGCGGGATTGGGCGCTAATTAA 1725 49.57 MASPQNVKAMRHSNQRAISPTSAFLRPFLNSLIFLNPSFIRDSVSSLSFILNQTLLPLKLIAPLMAKLTRKPLLYFCLLILFPIVVPAADLAQTECLKVPSSEFSNSLLSTIGVVRQVMAIFSPFSKLLGDSRLSTAISDCLDLLDSSVDQLSWSLSATQNPKAKNNSSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIVKDLASAGINQLTSQVYELLSMVKSIPNEPGRKLESEFPSWVKSEDRNLLQLNDLAADATVAADGTGDFTNVMDAVLAAPENSARRYVIYIKRGVYFENVEIKKKKWNLMMIGDGIDATVISGNRSFIDGWTTFRSATFAVSGRRFIARDITFENTAGAEKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECEISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLQPSVNATATYLGRPWKEYSRTIIMQSYMSNAIRPEGWLEWNGGGFALNTLFYAEFMNYGPGAGLTKRVNWPGYHRLNQSMEAANFTVAQFIEGNLWLPSTGVKYTAGLGAN 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 74117403 74121735 + Tan0009323.1 Tan08g2262 762154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan08g2262 574 CDD PMEI-like_4 74 228 - -
Tan08g2262 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 103 229 IPR035513 -
Tan08g2262 574 PANTHER PECTINESTERASE 130 562 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan08g2262 574 Pfam Pectinesterase 259 557 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan08g2262 574 SUPERFAMILY Pectin lyase-like 257 570 IPR011050 -
Tan08g2262 574 Pfam Plant invertase/pectin methylesterase inhibitor 123 224 IPR006501 GO:0004857(InterPro)
Tan08g2262 574 FunFam Pectinesterase 253 571 - -
Tan08g2262 574 SMART PMEI_2 87 227 IPR006501 GO:0004857(InterPro)
Tan08g2262 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 115 224 IPR035513 -
Tan08g2262 574 Gene3D - 253 571 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g2262 Tan-Chr8:74117403 Tan09g0149 Tan-Chr9:7600299 1.30E-129 dispersed
Tan08g2262 Tan-Chr8:74117403 Tan07g0472 Tan-Chr7:8595177 1.30E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan08g2262 K01051 - csv:116402691 873.233